View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_42 (Length: 302)
Name: NF2374_low_42
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 63 - 244
Target Start/End: Complemental strand, 47210372 - 47210191
Alignment:
| Q |
63 |
agctgttgcaaaaggcaatctcttgaatttcaacactactcatagaaaagacaagatggaatcttcaatatatgcaagctccattgccaagacaaaatct |
162 |
Q |
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| T |
47210372 |
agctgtagcaaaaggcaatctcttggatttcaacactactcgtagaaaatacaagatggaatcttcaatctatgcaagctccattgccaagacaaaatct |
47210273 |
T |
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| Q |
163 |
tgatttcatccaccatgtcatccacccccttgttactatcattgaagattccatcattttcatttctaatctttcatctcac |
244 |
Q |
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| T |
47210272 |
tgatttcatccaccatgtcatccacccccttgttactatcattgaagattccatcattttcatttctaatctttcatatcac |
47210191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 42193536 - 42193479
Alignment:
| Q |
100 |
actcatagaaaagacaagatggaatcttcaatatatgcaagctccattgccaagacaa |
157 |
Q |
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| T |
42193536 |
actcatagaagagacacgatggaattttcaacctttgtaagctccattgccaagacaa |
42193479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 8170574 - 8170723
Alignment:
| Q |
72 |
aaaaggcaatctcttgaatttcaacactactcatagaaaagacaagatggaatcttcaatatatgcaagctccattgccaagacaaaatcttgatttcat |
171 |
Q |
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| T |
8170574 |
aaaagacaatcccttggattccaactccactcgtagaagaggcaagttggaatcttcaacctattcaagctccattgccaagacaaaaacttaatatcat |
8170673 |
T |
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| Q |
172 |
ccaccatgtcatccacccccttgttactatcattgaagattccatcattt |
221 |
Q |
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| T |
8170674 |
caacgatatcctccacccccttactaatatctttgaagattctatcattt |
8170723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 20748552 - 20748667
Alignment:
| Q |
78 |
caatctcttgaatttcaacactactcatagaaaagacaagatggaatcttcaatatatgcaagctccattgccaagacaaaatcttgatttcatccacca |
177 |
Q |
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| T |
20748552 |
caatcccttggattccaacaccacacataaaacaaacaagatggattcttcaatttattcaagctctattgccaagacaataccttgatatcatcaacta |
20748651 |
T |
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| Q |
178 |
tgtcatccaccccctt |
193 |
Q |
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| T |
20748652 |
tatcatcgaccccctt |
20748667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 19861987 - 19861943
Alignment:
| Q |
113 |
acaagatggaatcttcaatatatgcaagctccattgccaagacaa |
157 |
Q |
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| T |
19861987 |
acaagacggaatcttcaatctattcaagctccattgccatgacaa |
19861943 |
T |
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