View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_46 (Length: 271)
Name: NF2374_low_46
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 29 - 263
Target Start/End: Original strand, 32983977 - 32984211
Alignment:
| Q |
29 |
aaaaattactaaggttacattgctttaaggaaatcaaatcaaattactagtacaatattttacacctactataagccctagtaagaatatatatcactat |
128 |
Q |
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| T |
32983977 |
aaaaattactaaggttacattgctttaaggaaatcaaatcaaattactagtacaatattttacacctactataagccctagtaagaatatatatcactat |
32984076 |
T |
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| Q |
129 |
ataagtagcacaagccattctcacattcccataacccaaattcaattttcaaagatgaagatgaatcacattattgttttcttttttgttctcctctcat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32984077 |
ataagtagcacaagccattctcacattcccataacccaaattcaattttcaaagatgaagatgaatcacattattgttttcttttttgttctcctctcat |
32984176 |
T |
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| Q |
229 |
catatacctcacatgtttcttcttctgcctatgat |
263 |
Q |
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| T |
32984177 |
catatacctcacatgtttcttcttctgccaatgat |
32984211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 263
Target Start/End: Original strand, 6521074 - 6521314
Alignment:
| Q |
29 |
aaaaattactaaggttacattgctttaaggaaatcaaatcaaattactagtacaatattttacacctactataagc--cctagtaagaatatatatcact |
126 |
Q |
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| T |
6521074 |
aaaaattattaaggttaagctgatttaaggaaatgaaatcaaaatactagtacagtatgttacacctactacaagctacctagcaagaatatatt--act |
6521171 |
T |
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| Q |
127 |
atataagtagcacaagccattctcacattcccataacccaaattcaattttcaaagatgaagatgaatcacattattgttttcttttttgttctcctc-- |
224 |
Q |
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| T |
6521172 |
atataagcagcaaaagctaatctcacatttccataacacagattcaattttcaaagatgaagatgaatcacattattattttcttttttgctctcctcat |
6521271 |
T |
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| Q |
225 |
----tcatcatatacctcacatgtttcttcttctgcctatgat |
263 |
Q |
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| T |
6521272 |
atcatcatcatacaccttccatgtttcttcttctgccaatgat |
6521314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 2345571 - 2345522
Alignment:
| Q |
189 |
atgaatcacattattgttttcttttttgttctcctctcatcatatacctc |
238 |
Q |
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|||| ||||| |||| |||||||||||||||| ||||||||||||||||| |
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| T |
2345571 |
atgattcacactattcttttcttttttgttcttctctcatcatatacctc |
2345522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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