View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_52 (Length: 261)
Name: NF2374_low_52
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_52 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 30 - 261
Target Start/End: Original strand, 44008467 - 44008695
Alignment:
| Q |
30 |
ccaaatagatatgaatgtggtatatagattcatatttaaagatcttggcattagttcaatatacaagatcttgtttttcataaaatnnnnnnntaataat |
129 |
Q |
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| T |
44008467 |
ccaaatagatatgaatgtggtatatagattcatatttaaagatcttggcattagttcaatatacaagatcttgtttttcataaaataaaataaaaaaaaa |
44008566 |
T |
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| Q |
130 |
aat-ttccatcaaccattccaatatacatttttgtatgggatgagccatggcgcaatggccaaattgattccttgtgaccggtggttagtcacgagttca |
228 |
Q |
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| T |
44008567 |
aaaattccatcaac-attccaatatacatttttgtatgggatgagccatggcgcaatggccaaattgattccttgtgacc---ggttagtcacgagttca |
44008662 |
T |
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| Q |
229 |
aattgatcccttatccactttcctcacaaatcc |
261 |
Q |
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| T |
44008663 |
aattgatcccttatccactttcctcacaaatcc |
44008695 |
T |
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