View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_54 (Length: 253)
Name: NF2374_low_54
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_54 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 38711332 - 38711101
Alignment:
| Q |
22 |
catcatcatcacctttcgttgcaccggtacactccccagcaacgtctccagcatggattgctccgacaccaagtgctactagatggaatgctccttcacc |
121 |
Q |
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| T |
38711332 |
catcatcatcacctttcgttgcaccggtacactccccagcaacgtctccagcatggattgctccgacaccaagtgctactagatggaatgctccttcacc |
38711233 |
T |
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| Q |
122 |
aagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcgccaagtgctaccagcaagactgctccaacacaa |
221 |
Q |
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| T |
38711232 |
aagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcaccaagtgctaccagcaagactgctccaacacaa |
38711133 |
T |
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| Q |
222 |
tcaccgatttggaatgctccttcaccaagtgc |
253 |
Q |
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| T |
38711132 |
tcaccggtttggaatgctccttcaccaagtgc |
38711101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 38711054 - 38710959
Alignment:
| Q |
105 |
tggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcgccaagtgctacc |
200 |
Q |
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| T |
38711054 |
tggagtgcttcttcaccaagtgctaccggttggactactccgacacactctccaacacaatcaccggcttggcatgctccttcaccaagtgctacc |
38710959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 38711123 - 38711028
Alignment:
| Q |
105 |
tggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcgccaagtgctacc |
200 |
Q |
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| T |
38711123 |
tggaatgctccttcaccaagtgctaccggctggactgctcccgcacactccccaacacaatcaccgacttggagtgcttcttcaccaagtgctacc |
38711028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 38710916 - 38710837
Alignment:
| Q |
105 |
tggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctcc |
184 |
Q |
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| T |
38710916 |
tggaatgctccgacaccaagtgctaccggttggactgcccctacacattctccagcacaatcatcagcttggaatgctcc |
38710837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 38710981 - 38710890
Alignment:
| Q |
109 |
atgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcgccaagtgctacc |
200 |
Q |
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| T |
38710981 |
atgctccttcaccaagtgctaccggttggactgctcctgcacattctccaacaaaatcatcgggttggaatgctccgacaccaagtgctacc |
38710890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 38711072 - 38711032
Alignment:
| Q |
213 |
ccaacacaatcaccgatttggaatgctccttcaccaagtgc |
253 |
Q |
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| T |
38711072 |
ccaacacaatcaccgacttggagtgcttcttcaccaagtgc |
38711032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 39704971 - 39705063
Alignment:
| Q |
105 |
tggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcgccaagtgct |
197 |
Q |
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| T |
39704971 |
tggaatgctccctcaccaagtgctattgtctggactgctccggcacactccccagtacaatcgccagcttggaatgctccctcgtcaagtgct |
39705063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 39704937 - 39704995
Alignment:
| Q |
140 |
tgctccaacacactccccatcacaatcacctgcttggaaggctccttcgccaagtgcta |
198 |
Q |
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| T |
39704937 |
tgctccaacacgctccccaacacaaccaccagcttggaatgctccctcaccaagtgcta |
39704995 |
T |
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