View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2374_low_69 (Length: 221)
Name: NF2374_low_69
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_69 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 85 - 221
Target Start/End: Original strand, 36912851 - 36912987
Alignment:
| Q |
85 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaatttaccttcgaatactttattaaaacatgatataaatgg |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
36912851 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaaattacattccaatactttattaaaacatgatataaatgg |
36912950 |
T |
|
| Q |
185 |
tgttgtgtttttgtttatcgtgaactttaattttatg |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36912951 |
tgttgtgtttttgtttatcgtgaactttaattttatg |
36912987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 85 - 221
Target Start/End: Original strand, 11166148 - 11166284
Alignment:
| Q |
85 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaatttaccttcgaatactttattaaaacatgatataaatgg |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
11166148 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaaattacattccaatactttattaaaacatgatataaatgg |
11166247 |
T |
|
| Q |
185 |
tgttgtgtttttgtttatcgtgaactttaattttatg |
221 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11166248 |
tgttgtgtttttgtttatcgagaactttaattttatg |
11166284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University