View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_7 (Length: 497)
Name: NF2374_low_7
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 89 - 364
Target Start/End: Original strand, 9462579 - 9462854
Alignment:
| Q |
89 |
caaactatgaaacactgacacagacacgacattgacaccattgtaaaaatggaagttaatgaatgtaattacacgtgtgagtgttgtgtcagacaataga |
188 |
Q |
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| T |
9462579 |
caaactatgaaacactgacacagacacgacattgacaccattgtaaaaatggaagttaatgaacgtaattacacgtgtgagtgtcgtgtcagacaataga |
9462678 |
T |
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| Q |
189 |
tatgtcttcggtgtcaatgttgcatagcttccttaacaagggaaataatctttaactacatatatagcatttaggaagtgcatgatttagtagtagaact |
288 |
Q |
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| T |
9462679 |
catgtcttcggtgtcaatgttgcatagcttccttaacaagggaaataatctttaactacatatatagcatttaggaagtgcatgatttagtagtagaact |
9462778 |
T |
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| Q |
289 |
tactttcttgatgtctttcattggacgtgcattttccttaacaaggggaataatcttcttagcaaaagaaaatcca |
364 |
Q |
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| T |
9462779 |
tactttcttgatgtctttcattggacgtgcattttccttaacaaggggaataatcttcttagcaaaagaaaatcca |
9462854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 426
Target Start/End: Original strand, 9462880 - 9462916
Alignment:
| Q |
390 |
cacttgactcaaccaagactttggctgcagtataatc |
426 |
Q |
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| T |
9462880 |
cacttgactcaaccaagactttggctgcagaataatc |
9462916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 10335804 - 10335771
Alignment:
| Q |
93 |
ctatgaaacactgacacagacacgacattgacac |
126 |
Q |
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| T |
10335804 |
ctatgaaacactgacacagacacgacagtgacac |
10335771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 33523486 - 33523453
Alignment:
| Q |
93 |
ctatgaaacactgacacagacacgacattgacac |
126 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
33523486 |
ctataaaacactgacacagacacgacattgacac |
33523453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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