View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2374_low_74 (Length: 213)

Name: NF2374_low_74
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2374_low_74
NF2374_low_74
[»] chr2 (2 HSPs)
chr2 (39-126)||(28135115-28135202)
chr2 (13-41)||(28135001-28135029)
[»] chr3 (2 HSPs)
chr3 (39-126)||(2231440-2231526)
chr3 (13-41)||(2231609-2231637)
[»] chr8 (1 HSPs)
chr8 (39-126)||(44807970-44808057)
[»] chr6 (2 HSPs)
chr6 (40-94)||(2110827-2110881)
chr6 (77-126)||(2110757-2110806)


Alignment Details
Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 28135115 - 28135202
Alignment:
Q  39 attaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaatgaaaaaggaagggaagattttccagatatatt 126  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  28135115 attaaaatcataaaaatttcaatggaatatagctcaatatctaaaattaaagggatgaaaaaggaagggaagattttccggatatatt 28135202  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 28135001 - 28135029
Alignment:
Q  13 tcttcataaatatttccagcacaaacatt 41  Q
    |||||||||||||||||||||||||||||    
T  28135001 tcttcataaatatttccagcacaaacatt 28135029  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 2231526 - 2231440
Alignment:
Q  39 attaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaatgaaaaaggaagggaagattttccagatatatt 126  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  2231526 attaaaatcataaaaatt-caatggaatatagctcaataactaaaattaaagggatgaaaaaggaagggaagattttccggatatatt 2231440  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 2231637 - 2231609
Alignment:
Q  13 tcttcataaatatttccagcacaaacatt 41  Q
    |||||||||||||||||||||||||||||    
T  2231637 tcttcataaatatttccagcacaaacatt 2231609  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 44808057 - 44807970
Alignment:
Q  39 attaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaatgaaaaaggaagggaagattttccagatatatt 126  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  44808057 attaaaatcataaaaatttcaattgaatatagctcaatgactaaaattaaagggatgaaaagggaagggaagattttccggatatatt 44807970  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 2110881 - 2110827
Alignment:
Q  40 ttaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaat 94  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2110881 ttaaaatcataaaaatttcaatggaatatagctcaataactaaaattaaaggaat 2110827  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 2110806 - 2110757
Alignment:
Q  77 aactaaaattaaaggaatgaaaaaggaagggaagattttccagatatatt 126  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2110806 aactaaaattaaaggaatgaaaaaggaagggaagattttccggatatatt 2110757  T

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