View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_76 (Length: 212)
Name: NF2374_low_76
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_76 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 9e-63; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 34925930 - 34926059
Alignment:
| Q |
83 |
aataatattaaagaactgaaactaaaattgtgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattg |
182 |
Q |
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| T |
34925930 |
aataatattaaaggactgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattg |
34926029 |
T |
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| Q |
183 |
taattcagacttagtcctggcatggtattt |
212 |
Q |
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| T |
34926030 |
taattcagacttagtcctggcatggtattt |
34926059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 34930370 - 34930499
Alignment:
| Q |
83 |
aataatattaaagaactgaaactaaaattgtgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattg |
182 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34930370 |
aataatattaaaggactgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattg |
34930469 |
T |
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| Q |
183 |
taattcagacttagtcctggcatggtattt |
212 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34930470 |
taattcagacttagtcctggcatggtattt |
34930499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 34935886 - 34936015
Alignment:
| Q |
83 |
aataatattaaagaactgaaactaaaattgtgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattg |
182 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34935886 |
aataatattaaaggactgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattg |
34935985 |
T |
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| Q |
183 |
taattcagacttagtcctggcatggtattt |
212 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34935986 |
taattcagacttagtcctggcatggtattt |
34936015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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