View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_81 (Length: 203)
Name: NF2374_low_81
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_81 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 43548852 - 43548718
Alignment:
| Q |
18 |
ccatcgcgtgatatttggagactatgtgttactacaacaattgttgtagtagtaagagaataaaagaaacataaatcgtaaggcaataaacacggtcttt |
117 |
Q |
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| T |
43548852 |
ccatcgcgtgatatttggagactatgtgttactacaacaattgttgttgtagtaagagaataaaagaaacataaatcgtaaggcaataaacacggtcttt |
43548753 |
T |
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| Q |
118 |
gtttatgcatttcgatcaagtgtgcatatctctgc |
152 |
Q |
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| T |
43548752 |
gtttatgcatttcgatcaagtgtgcatatctctgc |
43548718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 43549407 - 43549541
Alignment:
| Q |
18 |
ccatcgcgtgatatttggagactatgtgttactacaacaattgttgtagtagtaagagaataaaagaaacataaatcgtaaggcaataaacacggtcttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43549407 |
ccatcgcgtgatatttggagactatgtgttactacaacaattgttgttgtagtaagagaataaaagaaacataaatcgtaaggcaataaacacggtcttt |
43549506 |
T |
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| Q |
118 |
gtttatgcatttcgatcaagtgtgcatatctctgc |
152 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
43549507 |
gtttatgcatttcgatcaagtgtgcatatctctgc |
43549541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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