View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2375_high_11 (Length: 417)
Name: NF2375_high_11
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2375_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 34613412 - 34613785
Alignment:
| Q |
16 |
catgaccacctggttaaaagcatgcgctctatcaagaaagctaagacaactatgtannnnnnngttaaa--tagtttctcgactataattttaatatgga |
113 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||| |
|
|
| T |
34613412 |
catgaccacgtggttaaaagcatgcgctttatcaacaaagctaagacaactatgtatctttttgttaaaaatagtttatcgactagaattttaatatgga |
34613511 |
T |
|
| Q |
114 |
atctgaaatttgaagttcaaccatatataatataacgtctctttcaaatgagatatgtcacggagacaacgattacttgtttttaattgatatgcaatta |
213 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34613512 |
atttgaaatttgaagttcaaccatatataatataatgtctctttcaaatgagatatgtcacggagacaacgaatacttgtttttaattgatatgcaatta |
34613611 |
T |
|
| Q |
214 |
gttatttttatttatatttgagtcgggaagataatgaagtatgagagttttacacgtgaggctcaatttgtctaagggtgtttttgatatataatactct |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34613612 |
gttatttttatttatatttgagtcgggaagataatgaagtatgagagttttacacgtgaggctcaatttgtctaagggtgtttttgatatataatactct |
34613711 |
T |
|
| Q |
314 |
agagaacatggagaacaacaaatcatggactttgtttacgacgcaaattttggccacaaacagaattcatgtga |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34613712 |
agagaacatggagaacaacaaatcatggactttttttacgatgcaaattttggccacaaacagaattcatgtga |
34613785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 229 - 332
Target Start/End: Complemental strand, 9246575 - 9246472
Alignment:
| Q |
229 |
atttgagtcgggaagataatgaagtatgagagttttacacgtgaggctcaatttgtctaagggtgtttttgatatataatactctagagaacatggagaa |
328 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| | | ||||||| | || || |||||||||| || |
|
|
| T |
9246575 |
atttgagtcaggaagataatgaagtatgagagttttacatgtgacaaacaatttgtctaagggtgtgtctaatatatattgctgtaaagaacatggaaaa |
9246476 |
T |
|
| Q |
329 |
caac |
332 |
Q |
| |
|
|||| |
|
|
| T |
9246475 |
caac |
9246472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University