View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2375_high_12 (Length: 393)

Name: NF2375_high_12
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2375_high_12
NF2375_high_12
[»] chr2 (2 HSPs)
chr2 (26-382)||(21523237-21523594)
chr2 (70-129)||(40846811-40846869)
[»] chr8 (3 HSPs)
chr8 (72-129)||(23547838-23547895)
chr8 (70-124)||(2966393-2966446)
chr8 (74-131)||(24672546-24672603)
[»] chr7 (4 HSPs)
chr7 (70-129)||(10392319-10392377)
chr7 (70-129)||(27246775-27246833)
chr7 (22-57)||(40865193-40865228)
chr7 (70-124)||(3046383-3046436)
[»] chr6 (3 HSPs)
chr6 (22-57)||(5856233-5856268)
chr6 (70-129)||(11613132-11613190)
chr6 (22-50)||(11570590-11570618)
[»] chr4 (2 HSPs)
chr4 (22-57)||(15134378-15134413)
chr4 (70-131)||(39216325-39216385)
[»] chr3 (1 HSPs)
chr3 (16-50)||(25726632-25726666)
[»] chr5 (1 HSPs)
chr5 (79-131)||(17162674-17162725)
[»] chr1 (1 HSPs)
chr1 (18-50)||(33055254-33055286)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 26 - 382
Target Start/End: Complemental strand, 21523594 - 21523237
Alignment:
Q  26 gtgttaagaccactcaaatatggtgataccacaaa-gttactaagaaatccacagaagtggtggaaacaaactcattgaaatatgaatgaaggaaagata 124  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||    
T  21523594 gtgttaagaccactcaaatatggtaataccacaaaagttattaagaaatccacaaaagtagaggaaacaaactcattgaaatatgaatgaaggaaagata 21523495  T
Q  125 ggaaactgagtaaataagaaatagagcaataaatgagctataattaagaaagttgacatgannnnnnnnaa-ccatattataacaccccttgtgttccat 223  Q
    | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||        || |||||||||||||| ||||||||| ||     
T  21523494 gaaaactgagtaactaagaattagagcaataaatgagctataattaagaaagttgacatgattttttttaatccatattataacacaccttgtgttgcaa 21523395  T
Q  224 cataaattacataagtttctatatagatacacagataaggatt-caggaaagtagttcctctaccgaagggagcgtataacagctctaaagggactgtat 322  Q
    |||||||||||||||||||| ||  |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  21523394 cataaattacataagtttcttta--gatacacagataaggatttcaggaaagtagttcctccaccgaagggagcgtataacagctctaaatggactgtat 21523297  T
Q  323 gtggctctatattaacagctctataatcagggaacagatggtaatttacttctatccttt 382  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  21523296 gtggctctatattaacagctctataataatggaacagatggtaatttacttctatccttt 21523237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 40846869 - 40846811
Alignment:
Q  70 aaatccacagaagtggtggaaacaaactcattgaaatatgaatgaaggaaagataggaaa 129  Q
    ||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||| ||||    
T  40846869 aaatccacaaaagtggaggaaacaaactcatt-aaatttgaatgaaggaaagataagaaa 40846811  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 23547895 - 23547838
Alignment:
Q  72 atccacagaagtggtggaaacaaactcattgaaatatgaatgaaggaaagataggaaa 129  Q
    ||||||| |||||| |||||||||||||||||| | ||||||||||||||||| ||||    
T  23547895 atccacaaaagtggaggaaacaaactcattgaattttgaatgaaggaaagataagaaa 23547838  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 2966393 - 2966446
Alignment:
Q  70 aaatccacagaagtggtggaaacaaactcattgaaatatgaatgaaggaaagata 124  Q
    ||||||||| |||||| ||||||||||||||||  ||||||||||||||||||||    
T  2966393 aaatccacaaaagtggaggaaacaaactcattg-gatatgaatgaaggaaagata 2966446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 24672603 - 24672546
Alignment:
Q  74 ccacagaagtggtggaaacaaactcattgaaatatgaatgaaggaaagataggaaact 131  Q
    ||||| |||||| ||||||||||||||||  |||| |||||| ||||||||| |||||    
T  24672603 ccacataagtggaggaaacaaactcattgggatataaatgaatgaaagatagaaaact 24672546  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 10392377 - 10392319
Alignment:
Q  70 aaatccacagaagtggtggaaacaaactcattgaaatatgaatgaaggaaagataggaaa 129  Q
    ||||||||| |||||| ||||||||||||||||  || ||||||||||||||||| ||||    
T  10392377 aaatccacaaaagtggaggaaacaaactcattg-gatttgaatgaaggaaagataagaaa 10392319  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 27246833 - 27246775
Alignment:
Q  70 aaatccacagaagtggtggaaacaaactcattgaaatatgaatgaaggaaagataggaaa 129  Q
    ||||||||| |||||| ||||||||||| |||| | |||||||||| |||||||||||||    
T  27246833 aaatccacaaaagtggaggaaacaaacttattgga-tatgaatgaaagaaagataggaaa 27246775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 40865228 - 40865193
Alignment:
Q  22 tatggtgttaagaccactcaaatatggtgataccac 57  Q
    ||||||||||||||||||||||||||||| ||||||    
T  40865228 tatggtgttaagaccactcaaatatggtgttaccac 40865193  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 3046383 - 3046436
Alignment:
Q  70 aaatccacagaagtggtggaaacaaactcattgaaatatgaatgaaggaaagata 124  Q
    ||||||||| |||||| ||||||||||||||| | || |||||||||||||||||    
T  3046383 aaatccacaaaagtggaggaaacaaactcatt-agatttgaatgaaggaaagata 3046436  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 5856233 - 5856268
Alignment:
Q  22 tatggtgttaagaccactcaaatatggtgataccac 57  Q
    ||||||||||||||||||||||||||||| ||||||    
T  5856233 tatggtgttaagaccactcaaatatggtgttaccac 5856268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 11613190 - 11613132
Alignment:
Q  70 aaatccacagaagtggtggaaacaaactcattgaaatatgaatgaaggaaagataggaaa 129  Q
    ||||||||| |||||| |||||||||||||||| ||| |||||||| |||||||| ||||    
T  11613190 aaatccacaaaagtggaggaaacaaactcattg-aatttgaatgaatgaaagataagaaa 11613132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 11570618 - 11570590
Alignment:
Q  22 tatggtgttaagaccactcaaatatggtg 50  Q
    |||||||||||||||||||||||||||||    
T  11570618 tatggtgttaagaccactcaaatatggtg 11570590  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 15134378 - 15134413
Alignment:
Q  22 tatggtgttaagaccactcaaatatggtgataccac 57  Q
    ||||||||||||||||||||||||||||| ||||||    
T  15134378 tatggtgttaagaccactcaaatatggtgttaccac 15134413  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 39216385 - 39216325
Alignment:
Q  70 aaatccacagaagtggtggaaacaaactcattgaaatatgaatgaaggaaagataggaaact 131  Q
    ||||||||| |||||  |||||||||||||||| ||||||||  |||||||||||| |||||    
T  39216385 aaatccacaaaagtgtaggaaacaaactcattg-aatatgaaccaaggaaagatagaaaact 39216325  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 25726666 - 25726632
Alignment:
Q  16 cactactatggtgttaagaccactcaaatatggtg 50  Q
    ||||| |||||||||||||||||||||||||||||    
T  25726666 cactattatggtgttaagaccactcaaatatggtg 25726632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 17162674 - 17162725
Alignment:
Q  79 gaagtggtggaaacaaactcattgaaatatgaatgaaggaaagataggaaact 131  Q
    ||||||| ||||||||||  |||||| ||||||||||| ||||||||||||||    
T  17162674 gaagtggaggaaacaaacgaattgaa-tatgaatgaagaaaagataggaaact 17162725  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 33055254 - 33055286
Alignment:
Q  18 ctactatggtgttaagaccactcaaatatggtg 50  Q
    ||||||||||||| |||||||||||||||||||    
T  33055254 ctactatggtgttgagaccactcaaatatggtg 33055286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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