View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2375_high_16 (Length: 369)
Name: NF2375_high_16
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2375_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 30855876 - 30855526
Alignment:
| Q |
1 |
atccgaaaattatttcagcacacaagtacctagtgctcgaaagaaggaacaactgcaaggcatttttcaagtgattgaatgtgtgggctcatgaaagtat |
100 |
Q |
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| T |
30855876 |
atccgaaaattatttca-cacacaagtac-tagtgctcgaaagaaggaacaactgcaaggcatttttcaagtgattgaatgtgtgggctcatgaaagtat |
30855779 |
T |
|
| Q |
101 |
cttgatcttccttccattatttgatagaaaaagaaggctattttaactatatatgtgatcatacttggaagcgcatacaaagttaggtcaagtaaacatt |
200 |
Q |
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| T |
30855778 |
cttgatcttccttc-----tttgatagaaaaagaaggctattttaactatatatgtgatcgtacttggaagcgcatataaagttaggtcaagtaaacatt |
30855684 |
T |
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| Q |
201 |
tatcaaaagtggacaaagatgtacatattaaataatttcctcaatcaattctaatgtattgtatgagttcttttcttatagtgtctaatttaggag---- |
296 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| |
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| T |
30855683 |
tatcaaaagcggacatagatgtacatattaaataatttcctcaatcaattctaatgtattgcatgagttcttttcttatagcgtctaattttggagatga |
30855584 |
T |
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| Q |
297 |
-attcaatgtatgttaaattctttgcggtggggttcgaatagaaacaaagaaagaggt |
353 |
Q |
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| T |
30855583 |
aattcaatatatgttaaattctttgcggtggggttcgaatagaatcaaaggaagaggt |
30855526 |
T |
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