View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2375_high_22 (Length: 329)
Name: NF2375_high_22
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2375_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 134 - 318
Target Start/End: Complemental strand, 1236536 - 1236352
Alignment:
| Q |
134 |
gcatttaaatgtgttttttacattataaaaatagtctaatattcattctacatgaggctcaagatataccatcaccatgtaaattgaattgtgcagggta |
233 |
Q |
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| T |
1236536 |
gcatttaaatgtgttttttacattataaaaatagtctaatattcattctacacgaggctcaagatataccattaccatgtaaattgaattgtgcagggta |
1236437 |
T |
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| Q |
234 |
tagtggtttcaggagcaatggtagctgtaatttcatggtgtgtacacatgagaggtccattgtttgcctcagtttttaccccttt |
318 |
Q |
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| T |
1236436 |
tagtggtttcaggagcaatggtagctgtaatttcatggtgtgtacacatgagaggtccattgtttgcctcagtttttaccccttt |
1236352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 224 - 318
Target Start/End: Complemental strand, 916511 - 916417
Alignment:
| Q |
224 |
gtgcagggtatagtggtttcaggagcaatggtagctgtaatttcatggtgtgtacacatgagaggtccattgtttgcctcagtttttaccccttt |
318 |
Q |
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| T |
916511 |
gtgcagggtatagtggcttcaggagcaatggttgttgtaatttcatggtgtgttcacatgagaggtccattgtttgcctctgcttttaacccttt |
916417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 1236656 - 1236577
Alignment:
| Q |
18 |
ggaaattgggttggaatattagacttctaacagttgcttatgcggtatgttataattagcttaatgcacttctcatctatgcgtca |
103 |
Q |
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| T |
1236656 |
ggaaattgggttggaatattagacttctaacagttgcttatgcggtatg------ttagcttaatgcacttctcatctatgcgtca |
1236577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 916676 - 916630
Alignment:
| Q |
22 |
attgggttggaatattagacttctaacagttgcttatgcggtatgtt |
68 |
Q |
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| T |
916676 |
attgggttggaatattaggctactaattgttgcttatgcggtatgtt |
916630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 315
Target Start/End: Original strand, 25080151 - 25080262
Alignment:
| Q |
208 |
ccatgtaaattgaattgtgcagggtatagtggtt----tcaggagcaatggtagctgtaatttcatggtgtgtacacatgagaggtccattgtttgcctc |
303 |
Q |
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| T |
25080151 |
ccatgtgaattgaatggtgcagggaatagtggttggtttcaggggtaatgggtgatttaatttcatggtgagtacactttagaggtccattgtttgcctc |
25080250 |
T |
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| Q |
304 |
agtttttacccc |
315 |
Q |
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| T |
25080251 |
tgattttacccc |
25080262 |
T |
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