View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2375_high_24 (Length: 319)

Name: NF2375_high_24
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2375_high_24
NF2375_high_24
[»] chr4 (31 HSPs)
chr4 (128-164)||(13032882-13032918)
chr4 (128-161)||(28292051-28292084)
chr4 (128-161)||(40450256-40450289)
chr4 (128-160)||(7086092-7086124)
chr4 (129-161)||(27450123-27450155)
chr4 (128-160)||(52439338-52439370)
chr4 (128-163)||(19909351-19909386)
chr4 (128-159)||(22451933-22451964)
chr4 (128-159)||(31592529-31592560)
chr4 (128-159)||(34318405-34318436)
chr4 (129-164)||(34318663-34318698)
chr4 (128-159)||(51902046-51902077)
chr4 (125-159)||(26144370-26144404)
chr4 (128-162)||(29104156-29104190)
chr4 (128-161)||(3475484-3475517)
chr4 (128-161)||(12144543-12144576)
chr4 (128-161)||(12878673-12878706)
chr4 (128-161)||(13033152-13033185)
chr4 (128-161)||(31226525-31226558)
chr4 (128-161)||(33294939-33294972)
chr4 (128-161)||(36405657-36405690)
chr4 (128-165)||(47858455-47858492)
chr4 (128-160)||(1952734-1952766)
chr4 (125-161)||(24560734-24560770)
chr4 (128-160)||(26144157-26144189)
chr4 (128-164)||(30966875-30966911)
chr4 (128-160)||(32595892-32595924)
chr4 (128-160)||(35370414-35370446)
chr4 (128-160)||(36405879-36405911)
chr4 (128-160)||(46360919-46360951)
chr4 (128-160)||(54097099-54097131)
[»] chr1 (18 HSPs)
chr1 (125-164)||(39657268-39657307)
chr1 (125-163)||(17724074-17724112)
chr1 (129-170)||(50880083-50880124)
chr1 (128-160)||(17724292-17724324)
chr1 (128-164)||(31653981-31654017)
chr1 (128-159)||(972841-972872)
chr1 (133-164)||(31880138-31880169)
chr1 (129-164)||(37268821-37268856)
chr1 (128-159)||(51809756-51809787)
chr1 (128-162)||(17746504-17746538)
chr1 (128-170)||(26486795-26486837)
chr1 (128-165)||(166477-166514)
chr1 (128-161)||(16555323-16555356)
chr1 (128-160)||(1632510-1632542)
chr1 (129-161)||(13296043-13296075)
chr1 (128-160)||(26399200-26399232)
chr1 (129-161)||(31883451-31883483)
chr1 (128-160)||(52413120-52413152)
[»] chr2 (37 HSPs)
chr2 (128-162)||(8214340-8214374)
chr2 (128-162)||(11115257-11115291)
chr2 (128-162)||(14793249-14793283)
chr2 (128-161)||(39341264-39341297)
chr2 (128-161)||(39341381-39341414)
chr2 (128-160)||(22552504-22552536)
chr2 (128-160)||(41611586-41611618)
chr2 (128-160)||(45632542-45632574)
chr2 (128-159)||(17688179-17688210)
chr2 (128-159)||(31108609-31108640)
chr2 (128-159)||(38470985-38471016)
chr2 (128-158)||(5558223-5558253)
chr2 (128-162)||(8214585-8214619)
chr2 (128-158)||(17920092-17920122)
chr2 (128-158)||(33563733-33563763)
chr2 (125-158)||(1366791-1366824)
chr2 (131-160)||(7785349-7785378)
chr2 (128-161)||(8467468-8467501)
chr2 (128-161)||(14793481-14793514)
chr2 (128-161)||(24952081-24952114)
chr2 (126-163)||(30728693-30728729)
chr2 (128-161)||(32845688-32845721)
chr2 (128-161)||(33441503-33441536)
chr2 (128-161)||(36944002-36944035)
chr2 (128-161)||(36944256-36944289)
chr2 (128-161)||(43766507-43766540)
chr2 (128-169)||(44610917-44610958)
chr2 (128-160)||(7327767-7327799)
chr2 (129-161)||(13692002-13692034)
chr2 (128-160)||(18544032-18544064)
chr2 (131-163)||(21593157-21593189)
chr2 (128-160)||(28739407-28739439)
chr2 (128-164)||(29966333-29966369)
chr2 (128-160)||(32195905-32195937)
chr2 (128-160)||(32845456-32845488)
chr2 (128-160)||(36525618-36525650)
chr2 (128-160)||(38127762-38127794)
[»] chr8 (22 HSPs)
chr8 (128-161)||(38132087-38132120)
chr8 (128-160)||(23428963-23428995)
chr8 (125-161)||(36343144-36343180)
chr8 (128-164)||(45530497-45530533)
chr8 (132-162)||(9857456-9857486)
chr8 (128-161)||(11961129-11961162)
chr8 (128-161)||(22686741-22686774)
chr8 (128-161)||(23564100-23564133)
chr8 (128-161)||(34227325-34227358)
chr8 (128-164)||(38661641-38661678)
chr8 (128-161)||(38687537-38687570)
chr8 (129-161)||(2873792-2873824)
chr8 (128-160)||(4335008-4335040)
chr8 (128-160)||(13572539-13572571)
chr8 (128-160)||(21692631-21692663)
chr8 (128-160)||(25653703-25653735)
chr8 (128-160)||(26538203-26538235)
chr8 (129-157)||(26711350-26711378)
chr8 (128-160)||(38711966-38711998)
chr8 (128-160)||(41708827-41708859)
chr8 (128-156)||(43382754-43382782)
chr8 (128-160)||(43383016-43383048)
[»] chr7 (18 HSPs)
chr7 (126-163)||(21852761-21852798)
chr7 (128-160)||(19336042-19336074)
chr7 (128-164)||(24478019-24478055)
chr7 (128-163)||(442878-442913)
chr7 (125-159)||(1263785-1263819)
chr7 (130-160)||(17163830-17163860)
chr7 (128-162)||(43596538-43596572)
chr7 (133-162)||(1676244-1676273)
chr7 (133-162)||(5835934-5835963)
chr7 (128-161)||(45639750-45639783)
chr7 (128-160)||(12005263-12005295)
chr7 (128-160)||(18655375-18655407)
chr7 (128-160)||(20164449-20164481)
chr7 (128-160)||(21444209-21444241)
chr7 (128-164)||(24757356-24757392)
chr7 (128-160)||(28000144-28000176)
chr7 (128-160)||(31417528-31417560)
chr7 (128-160)||(44412558-44412590)
[»] chr3 (30 HSPs)
chr3 (128-161)||(3820492-3820525)
chr3 (128-161)||(54087756-54087789)
chr3 (128-160)||(19301178-19301210)
chr3 (128-164)||(26480254-26480290)
chr3 (128-164)||(33898298-33898334)
chr3 (130-165)||(14826103-14826138)
chr3 (128-159)||(20123886-20123917)
chr3 (128-158)||(8487943-8487973)
chr3 (125-162)||(24286409-24286447)
chr3 (128-162)||(29853653-29853687)
chr3 (128-158)||(35460646-35460676)
chr3 (125-159)||(51688011-51688045)
chr3 (128-161)||(1351493-1351526)
chr3 (128-161)||(11761080-11761113)
chr3 (128-161)||(39846606-39846639)
chr3 (128-161)||(46994117-46994150)
chr3 (128-161)||(48418652-48418685)
chr3 (126-162)||(49166794-49166831)
chr3 (128-160)||(4548815-4548847)
chr3 (128-160)||(17261024-17261056)
chr3 (128-160)||(18946056-18946088)
chr3 (132-160)||(30908786-30908814)
chr3 (128-160)||(35359471-35359503)
chr3 (128-160)||(35434098-35434130)
chr3 (129-161)||(38703329-38703361)
chr3 (128-160)||(52491572-52491604)
chr3 (128-160)||(53667679-53667711)
chr3 (128-160)||(54012357-54012389)
chr3 (128-160)||(54012614-54012646)
chr3 (128-160)||(55090269-55090301)
[»] scaffold0111 (1 HSPs)
scaffold0111 (128-160)||(29709-29741)
[»] chr6 (18 HSPs)
chr6 (129-161)||(14985335-14985367)
chr6 (128-159)||(2181317-2181348)
chr6 (128-163)||(8238002-8238037)
chr6 (129-160)||(13420188-13420219)
chr6 (128-158)||(14924965-14924995)
chr6 (128-158)||(15959619-15959649)
chr6 (128-169)||(7017060-7017101)
chr6 (128-164)||(11336649-11336686)
chr6 (128-161)||(33552796-33552829)
chr6 (128-160)||(1309785-1309817)
chr6 (128-160)||(2033124-2033156)
chr6 (128-160)||(10545830-10545862)
chr6 (133-161)||(15542873-15542901)
chr6 (128-160)||(17884345-17884377)
chr6 (128-160)||(25562153-25562185)
chr6 (128-160)||(26101667-26101699)
chr6 (128-160)||(31826214-31826246)
chr6 (128-160)||(33225441-33225473)
[»] chr5 (17 HSPs)
chr5 (125-161)||(5661897-5661933)
chr5 (128-163)||(21039861-21039896)
chr5 (206-245)||(39172432-39172471)
chr5 (125-162)||(18254148-18254186)
chr5 (129-159)||(31601749-31601779)
chr5 (128-161)||(39089812-39089845)
chr5 (128-160)||(2724483-2724515)
chr5 (128-160)||(3214869-3214901)
chr5 (128-160)||(4413926-4413958)
chr5 (128-160)||(7899951-7899983)
chr5 (128-160)||(12148252-12148284)
chr5 (128-164)||(17886047-17886083)
chr5 (128-160)||(18254394-18254426)
chr5 (128-160)||(25962801-25962833)
chr5 (128-160)||(31312797-31312829)
chr5 (128-164)||(36518885-36518921)
chr5 (128-160)||(37082300-37082332)
[»] scaffold0053 (1 HSPs)
scaffold0053 (128-161)||(29903-29936)
[»] scaffold0192 (1 HSPs)
scaffold0192 (128-160)||(14473-14505)


Alignment Details
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 13032918 - 13032882
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctattt 164  Q
    |||||||||||||||||||||||||||||||||||||    
T  13032918 ctatattacagggggtaaaacaccattaaccctattt 13032882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 28292084 - 28292051
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||||||||||||||||||    
T  28292084 ctatattacagggggtaaaacaccattaacccta 28292051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 40450289 - 40450256
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||||||||||||||||||    
T  40450289 ctatattacagggggtaaaacaccattaacccta 40450256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 7086092 - 7086124
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||||||||||||||    
T  7086092 ctatattacagggggtaaaacaccattaaccct 7086124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 27450123 - 27450155
Alignment:
Q  129 tatattacagggggtaaaacaccattaacccta 161  Q
    |||||||||||||||||||||||||||||||||    
T  27450123 tatattacagggggtaaaacaccattaacccta 27450155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 52439370 - 52439338
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||||||||||||||    
T  52439370 ctatattacagggggtaaaacaccattaaccct 52439338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 19909351 - 19909386
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctatt 163  Q
    ||||||||||||||||||||||| ||||||||||||    
T  19909351 ctatattacagggggtaaaacactattaaccctatt 19909386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 159
Target Start/End: Complemental strand, 22451964 - 22451933
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccc 159  Q
    ||||||||||||||||||||||||||||||||    
T  22451964 ctatattacagggggtaaaacaccattaaccc 22451933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 159
Target Start/End: Complemental strand, 31592560 - 31592529
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccc 159  Q
    ||||||||||||||||||||||||||||||||    
T  31592560 ctatattacagggggtaaaacaccattaaccc 31592529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 159
Target Start/End: Complemental strand, 34318436 - 34318405
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccc 159  Q
    ||||||||||||||||||||||||||||||||    
T  34318436 ctatattacagggggtaaaacaccattaaccc 34318405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 34318663 - 34318698
Alignment:
Q  129 tatattacagggggtaaaacaccattaaccctattt 164  Q
    |||||||||||||||||| |||||||||||||||||    
T  34318663 tatattacagggggtaaagcaccattaaccctattt 34318698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 159
Target Start/End: Complemental strand, 51902077 - 51902046
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccc 159  Q
    ||||||||||||||||||||||||||||||||    
T  51902077 ctatattacagggggtaaaacaccattaaccc 51902046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 159
Target Start/End: Original strand, 26144370 - 26144404
Alignment:
Q  125 gatctatattacagggggtaaaacaccattaaccc 159  Q
    |||||||||||||||||||||| ||||||||||||    
T  26144370 gatctatattacagggggtaaagcaccattaaccc 26144404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 162
Target Start/End: Complemental strand, 29104190 - 29104156
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctat 162  Q
    ||||||||||||||||||||||| |||||||||||    
T  29104190 ctatattacagggggtaaaacactattaaccctat 29104156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 3475517 - 3475484
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  3475517 ctatattacagggggtaaagcaccattaacccta 3475484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 12144576 - 12144543
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  12144576 ctatattacagggggtaaagcaccattaacccta 12144543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 12878706 - 12878673
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  12878706 ctatattacagggggtaaagcaccattaacccta 12878673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 13033152 - 13033185
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  13033152 ctatattacagggggtaaagcaccattaacccta 13033185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 31226525 - 31226558
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||||||| ||||||||||    
T  31226525 ctatattacagggggtaaaacactattaacccta 31226558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 33294972 - 33294939
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  33294972 ctatattacagggggtaaagcaccattaacccta 33294939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 36405690 - 36405657
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  36405690 ctatattacagggggtaaagcaccattaacccta 36405657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 47858455 - 47858492
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctatttg 165  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  47858455 ctatattacagggggtaaagcaccattaaccctttttg 47858492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 1952766 - 1952734
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  1952766 ctatattacagggggtaaagcaccattaaccct 1952734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 24560734 - 24560770
Alignment:
Q  125 gatctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  24560734 gatctatattacaaggggtaaaacaccattaatccta 24560770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 26144189 - 26144157
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  26144189 ctatattacagggggtaaagcaccattaaccct 26144157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 30966875 - 30966911
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctattt 164  Q
    |||||||||| |||||||| |||||||||||||||||    
T  30966875 ctatattacaaggggtaaatcaccattaaccctattt 30966911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 32595892 - 32595924
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  32595892 ctatattacagggggtaaatcaccattaaccct 32595924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 35370414 - 35370446
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  35370414 ctatattacagggggtaaagcaccattaaccct 35370446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 36405879 - 36405911
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  36405879 ctatattacagggggtaaagcaccattaaccct 36405911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 46360919 - 46360951
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  46360919 ctatattacagggggtaaagcaccattaaccct 46360951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 54097131 - 54097099
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  54097131 ctatattacagggggtaaagcaccattaaccct 54097099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 39657307 - 39657268
Alignment:
Q  125 gatctatattacagggggtaaaacaccattaaccctattt 164  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  39657307 gatctatattacagggggtaaagcaccattaaccctattt 39657268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 17724112 - 17724074
Alignment:
Q  125 gatctatattacagggggtaaaacaccattaaccctatt 163  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  17724112 gatctatattacagggggtaaaacaccattaactctatt 17724074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 50880083 - 50880124
Alignment:
Q  129 tatattacagggggtaaaacaccattaaccctatttgaattt 170  Q
    |||||||||||||||||||||||||||||||| ||| |||||    
T  50880083 tatattacagggggtaaaacaccattaaccctttttaaattt 50880124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 17724292 - 17724324
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||||||||||||||    
T  17724292 ctatattacagggggtaaaacaccattaaccct 17724324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 31654017 - 31653981
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctattt 164  Q
    |||||||||||| ||||||||||||||||||||||||    
T  31654017 ctatattacaggaggtaaaacaccattaaccctattt 31653981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 159
Target Start/End: Complemental strand, 972872 - 972841
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccc 159  Q
    ||||||||||||||||||||||||||||||||    
T  972872 ctatattacagggggtaaaacaccattaaccc 972841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 164
Target Start/End: Original strand, 31880138 - 31880169
Alignment:
Q  133 ttacagggggtaaaacaccattaaccctattt 164  Q
    ||||||||||||||||||||||||||||||||    
T  31880138 ttacagggggtaaaacaccattaaccctattt 31880169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 164
Target Start/End: Complemental strand, 37268856 - 37268821
Alignment:
Q  129 tatattacagggggtaaaacaccattaaccctattt 164  Q
    |||||||||||||||||||||| |||||||||||||    
T  37268856 tatattacagggggtaaaacactattaaccctattt 37268821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 159
Target Start/End: Complemental strand, 51809787 - 51809756
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccc 159  Q
    ||||||||||||||||||||||||||||||||    
T  51809787 ctatattacagggggtaaaacaccattaaccc 51809756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 162
Target Start/End: Original strand, 17746504 - 17746538
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctat 162  Q
    |||||||| ||||||||||||||||||||||||||    
T  17746504 ctatattatagggggtaaaacaccattaaccctat 17746538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 26486795 - 26486837
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctatttgaattt 170  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||    
T  26486795 ctatattacagggggtaaagcaccattaacccttttttaattt 26486837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 166514 - 166477
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctatttg 165  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  166514 ctatattatagggggtaaaacatcattaaccctatttg 166477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 16555356 - 16555323
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  16555356 ctatattacagggggtaaagcaccattaacccta 16555323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 1632510 - 1632542
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||| ||||||||||||||||    
T  1632510 ctatattacagggggttaaacaccattaaccct 1632542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 13296043 - 13296075
Alignment:
Q  129 tatattacagggggtaaaacaccattaacccta 161  Q
    |||||||||||||||||| ||||||||||||||    
T  13296043 tatattacagggggtaaagcaccattaacccta 13296075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 26399200 - 26399232
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  26399200 ctatattacagggggtaaaacactattaaccct 26399232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 31883483 - 31883451
Alignment:
Q  129 tatattacagggggtaaaacaccattaacccta 161  Q
    |||||||||||||||||||||| ||||||||||    
T  31883483 tatattacagggggtaaaacactattaacccta 31883451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 52413152 - 52413120
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  52413152 ctatattacagggggtaaagcaccattaaccct 52413120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 162
Target Start/End: Complemental strand, 8214374 - 8214340
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctat 162  Q
    |||||||||||||||||||||||||||||||||||    
T  8214374 ctatattacagggggtaaaacaccattaaccctat 8214340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 162
Target Start/End: Complemental strand, 11115291 - 11115257
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctat 162  Q
    |||||||||||||||||||||||||||||||||||    
T  11115291 ctatattacagggggtaaaacaccattaaccctat 11115257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 162
Target Start/End: Complemental strand, 14793283 - 14793249
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctat 162  Q
    |||||||||||||||||||||||||||||||||||    
T  14793283 ctatattacagggggtaaaacaccattaaccctat 14793249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 39341297 - 39341264
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||||||||||||||||||    
T  39341297 ctatattacagggggtaaaacaccattaacccta 39341264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 39341381 - 39341414
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||||||||||||||||||    
T  39341381 ctatattacagggggtaaaacaccattaacccta 39341414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 22552536 - 22552504
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||||||||||||||    
T  22552536 ctatattacagggggtaaaacaccattaaccct 22552504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 41611586 - 41611618
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||||||||||||||    
T  41611586 ctatattacagggggtaaaacaccattaaccct 41611618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 45632574 - 45632542
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||||||||||||||    
T  45632574 ctatattacagggggtaaaacaccattaaccct 45632542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 159
Target Start/End: Original strand, 17688179 - 17688210
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccc 159  Q
    ||||||||||||||||||||||||||||||||    
T  17688179 ctatattacagggggtaaaacaccattaaccc 17688210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 159
Target Start/End: Original strand, 31108609 - 31108640
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccc 159  Q
    ||||||||||||||||||||||||||||||||    
T  31108609 ctatattacagggggtaaaacaccattaaccc 31108640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 159
Target Start/End: Original strand, 38470985 - 38471016
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccc 159  Q
    ||||||||||||||||||||||||||||||||    
T  38470985 ctatattacagggggtaaaacaccattaaccc 38471016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 158
Target Start/End: Complemental strand, 5558253 - 5558223
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacc 158  Q
    |||||||||||||||||||||||||||||||    
T  5558253 ctatattacagggggtaaaacaccattaacc 5558223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 162
Target Start/End: Original strand, 8214585 - 8214619
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctat 162  Q
    ||||||||||||||||||| |||||||||||||||    
T  8214585 ctatattacagggggtaaagcaccattaaccctat 8214619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 158
Target Start/End: Complemental strand, 17920122 - 17920092
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacc 158  Q
    |||||||||||||||||||||||||||||||    
T  17920122 ctatattacagggggtaaaacaccattaacc 17920092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 158
Target Start/End: Complemental strand, 33563763 - 33563733
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacc 158  Q
    |||||||||||||||||||||||||||||||    
T  33563763 ctatattacagggggtaaaacaccattaacc 33563733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 1366791 - 1366824
Alignment:
Q  125 gatctatattacagggggtaaaacaccattaacc 158  Q
    |||||||||||||||||||||| |||||||||||    
T  1366791 gatctatattacagggggtaaagcaccattaacc 1366824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 160
Target Start/End: Original strand, 7785349 - 7785378
Alignment:
Q  131 tattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||||||||||    
T  7785349 tattacagggggtaaaacaccattaaccct 7785378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 8467468 - 8467501
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    |||||||||||||||||||||||| |||||||||    
T  8467468 ctatattacagggggtaaaacaccgttaacccta 8467501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 14793481 - 14793514
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  14793481 ctatattacagggggtaaagcaccattaacccta 14793514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 24952081 - 24952114
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  24952081 ctatattacagggggtaaagcaccattaacccta 24952114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 30728729 - 30728693
Alignment:
Q  126 atctatattacagggggtaaaacaccattaaccctatt 163  Q
    |||||||||||||||| |||||||||||||||||||||    
T  30728729 atctatattacagggg-taaaacaccattaaccctatt 30728693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 32845688 - 32845721
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  32845688 ctatattacagggggtaaagcaccattaacccta 32845721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 33441536 - 33441503
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  33441536 ctatattacagggggtaaagcaccattaacccta 33441503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 36944035 - 36944002
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||||||||||||| ||||    
T  36944035 ctatattacagggggtaaaacaccattaatccta 36944002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 36944256 - 36944289
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  36944256 ctatattacagggggtaaagcaccattaacccta 36944289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 43766507 - 43766540
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  43766507 ctatattacagggggtaaagcaccattaacccta 43766540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 44610958 - 44610917
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctatttgaatt 169  Q
    ||||||||||||||||||| |||||||||||| |||| ||||    
T  44610958 ctatattacagggggtaaagcaccattaacccaattttaatt 44610917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 7327799 - 7327767
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  7327799 ctatattacagggggtaaagcaccattaaccct 7327767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 13692002 - 13692034
Alignment:
Q  129 tatattacagggggtaaaacaccattaacccta 161  Q
    |||||||||||||||||| ||||||||||||||    
T  13692002 tatattacagggggtaaagcaccattaacccta 13692034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 18544032 - 18544064
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||| |||||||||||||||||||||    
T  18544032 ctatattacagagggtaaaacaccattaaccct 18544064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 21593189 - 21593157
Alignment:
Q  131 tattacagggggtaaaacaccattaaccctatt 163  Q
    ||||||||||||||||||||| |||||||||||    
T  21593189 tattacagggggtaaaacacctttaaccctatt 21593157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 28739439 - 28739407
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  28739439 ctatattacagggggtaaagcaccattaaccct 28739407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 29966369 - 29966333
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctattt 164  Q
    |||||||||||||| |||||||||||||| |||||||    
T  29966369 ctatattacaggggataaaacaccattaagcctattt 29966333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 32195937 - 32195905
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||| ||||||||||||||||||||||||    
T  32195937 ctatattatagggggtaaaacaccattaaccct 32195905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 32845488 - 32845456
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  32845488 ctatattacagggggtaaagcaccattaaccct 32845456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 36525618 - 36525650
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  36525618 ctatattacagggggtaaaacactattaaccct 36525650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 38127794 - 38127762
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  38127794 ctatattacagggggtaaaacactattaaccct 38127762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 38132087 - 38132120
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||||||||||||||||||    
T  38132087 ctatattacagggggtaaaacaccattaacccta 38132120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 23428963 - 23428995
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||||||||||||||    
T  23428963 ctatattacagggggtaaaacaccattaaccct 23428995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 36343180 - 36343144
Alignment:
Q  125 gatctatattacagggggtaaaacaccattaacccta 161  Q
    |||||||||||||||||||||||||| ||||||||||    
T  36343180 gatctatattacagggggtaaaacactattaacccta 36343144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 45530533 - 45530497
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctattt 164  Q
    ||||||||||||||||||| |||||||||||||||||    
T  45530533 ctatattacagggggtaaagcaccattaaccctattt 45530497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 162
Target Start/End: Original strand, 9857456 - 9857486
Alignment:
Q  132 attacagggggtaaaacaccattaaccctat 162  Q
    |||||||||||||||||||||||||||||||    
T  9857456 attacagggggtaaaacaccattaaccctat 9857486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 11961129 - 11961162
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  11961129 ctatattacagggggtaaaccaccattaacccta 11961162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 22686774 - 22686741
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  22686774 ctatattacagggggtaaagcaccattaacccta 22686741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 23564133 - 23564100
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  23564133 ctatattacagggggtaaagcaccattaacccta 23564100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 34227358 - 34227325
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||||||| ||||||||||    
T  34227358 ctatattacagggggtaaaacactattaacccta 34227325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 38661641 - 38661678
Alignment:
Q  128 ctatattacaggggg-taaaacaccattaaccctattt 164  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  38661641 ctatattacagggggataaaacaccattaaccctattt 38661678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 38687537 - 38687570
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    |||||||||||||| |||||||||||||||||||    
T  38687537 ctatattacaggggataaaacaccattaacccta 38687570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 2873792 - 2873824
Alignment:
Q  129 tatattacagggggtaaaacaccattaacccta 161  Q
    |||||||||||||||||||||| ||||||||||    
T  2873792 tatattacagggggtaaaacactattaacccta 2873824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 4335008 - 4335040
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  4335008 ctatattacagggggtaaaacactattaaccct 4335040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 13572571 - 13572539
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  13572571 ctatattacagggggtaaaacactattaaccct 13572539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 21692631 - 21692663
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  21692631 ctatattacagggggtaaagcaccattaaccct 21692663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 25653735 - 25653703
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  25653735 ctatattacagggggtaaaacactattaaccct 25653703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 26538203 - 26538235
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||| ||||||||||    
T  26538203 ctatattacagggggtaaaacatcattaaccct 26538235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 26711378 - 26711350
Alignment:
Q  129 tatattacagggggtaaaacaccattaac 157  Q
    |||||||||||||||||||||||||||||    
T  26711378 tatattacagggggtaaaacaccattaac 26711350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 38711966 - 38711998
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  38711966 ctatattacagggggtaaaacactattaaccct 38711998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 41708859 - 41708827
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  41708859 ctatattacagggggtaaagcaccattaaccct 41708827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 156
Target Start/End: Complemental strand, 43382782 - 43382754
Alignment:
Q  128 ctatattacagggggtaaaacaccattaa 156  Q
    |||||||||||||||||||||||||||||    
T  43382782 ctatattacagggggtaaaacaccattaa 43382754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 43383016 - 43383048
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  43383016 ctatattacagggggtaaagcaccattaaccct 43383048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 21852798 - 21852761
Alignment:
Q  126 atctatattacagggggtaaaacaccattaaccctatt 163  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  21852798 atctatattacagggggtaaagcaccattaaccctatt 21852761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 19336074 - 19336042
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||||||||||||||    
T  19336074 ctatattacagggggtaaaacaccattaaccct 19336042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 24478055 - 24478019
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctattt 164  Q
    ||||||||||||||||||||||| |||||||||||||    
T  24478055 ctatattacagggggtaaaacactattaaccctattt 24478019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 442878 - 442913
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctatt 163  Q
    ||||||||||||||||||||||| ||||||||||||    
T  442878 ctatattacagggggtaaaacactattaaccctatt 442913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 1263819 - 1263785
Alignment:
Q  125 gatctatattacagggggtaaaacaccattaaccc 159  Q
    |||||||||||||||||||||| ||||||||||||    
T  1263819 gatctatattacagggggtaaagcaccattaaccc 1263785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 160
Target Start/End: Original strand, 17163830 - 17163860
Alignment:
Q  130 atattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||||||||||||    
T  17163830 atattacagggggtaaaacaccattaaccct 17163860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 162
Target Start/End: Original strand, 43596538 - 43596572
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctat 162  Q
    ||||||||||||||||||| |||||||||||||||    
T  43596538 ctatattacagggggtaaagcaccattaaccctat 43596572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 162
Target Start/End: Complemental strand, 1676273 - 1676244
Alignment:
Q  133 ttacagggggtaaaacaccattaaccctat 162  Q
    ||||||||||||||||||||||||||||||    
T  1676273 ttacagggggtaaaacaccattaaccctat 1676244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 162
Target Start/End: Original strand, 5835934 - 5835963
Alignment:
Q  133 ttacagggggtaaaacaccattaaccctat 162  Q
    ||||||||||||||||||||||||||||||    
T  5835934 ttacagggggtaaaacaccattaaccctat 5835963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 45639750 - 45639783
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  45639750 ctatattacagggggtaaagcaccattaacccta 45639783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 12005295 - 12005263
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  12005295 ctatattacagggggtaaaacactattaaccct 12005263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 18655407 - 18655375
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  18655407 ctatattacagggggtaaagcaccattaaccct 18655375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 20164449 - 20164481
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  20164449 ctatattacagggggtaaaacactattaaccct 20164481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 21444209 - 21444241
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  21444209 ctatattacagggggtaaaacactattaaccct 21444241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 24757392 - 24757356
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctattt 164  Q
    |||||||||||  ||||||||||||||||||||||||    
T  24757392 ctatattacagaaggtaaaacaccattaaccctattt 24757356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 28000144 - 28000176
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  28000144 ctatattacagggggtaaagcaccattaaccct 28000176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 31417528 - 31417560
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  31417528 ctatattacagggggtaaagcaccattaaccct 31417560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 44412558 - 44412590
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  44412558 ctatattacagggggtaaagcaccattaaccct 44412590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 3820525 - 3820492
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||||||||||||||||||    
T  3820525 ctatattacagggggtaaaacaccattaacccta 3820492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 54087756 - 54087789
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||||||||||||||||||    
T  54087756 ctatattacagggggtaaaacaccattaacccta 54087789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 19301210 - 19301178
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||||||||||||||    
T  19301210 ctatattacagggggtaaaacaccattaaccct 19301178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 26480254 - 26480290
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctattt 164  Q
    |||||||| ||||||||||||||||||||||||||||    
T  26480254 ctatattagagggggtaaaacaccattaaccctattt 26480290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 33898298 - 33898334
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctattt 164  Q
    ||||||||||||||||||| |||||||||||||||||    
T  33898298 ctatattacagggggtaaagcaccattaaccctattt 33898334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 14826103 - 14826138
Alignment:
Q  130 atattacagggggtaaaacaccattaaccctatttg 165  Q
    ||||||||||||||||||||| ||||||||||||||    
T  14826103 atattacagggggtaaaacactattaaccctatttg 14826138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 159
Target Start/End: Original strand, 20123886 - 20123917
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccc 159  Q
    ||||||||||||||||||||||||||||||||    
T  20123886 ctatattacagggggtaaaacaccattaaccc 20123917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 158
Target Start/End: Original strand, 8487943 - 8487973
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacc 158  Q
    |||||||||||||||||||||||||||||||    
T  8487943 ctatattacagggggtaaaacaccattaacc 8487973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 24286409 - 24286447
Alignment:
Q  125 gatctatattacagggg-gtaaaacaccattaaccctat 162  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  24286409 gatctatattacaggggggtaaaacaccattaaccctat 24286447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 162
Target Start/End: Original strand, 29853653 - 29853687
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctat 162  Q
    ||||||||||||||||||| |||||||||||||||    
T  29853653 ctatattacagggggtaaagcaccattaaccctat 29853687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 158
Target Start/End: Complemental strand, 35460676 - 35460646
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacc 158  Q
    |||||||||||||||||||||||||||||||    
T  35460676 ctatattacagggggtaaaacaccattaacc 35460646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 51688045 - 51688011
Alignment:
Q  125 gatctatattacagggggtaaaacaccattaaccc 159  Q
    |||||||||||||||||||||| ||||||||||||    
T  51688045 gatctatattacagggggtaaagcaccattaaccc 51688011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 1351493 - 1351526
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  1351493 ctatattacagggggtaaagcaccattaacccta 1351526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 11761113 - 11761080
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  11761113 ctatattacagggggtaaagcaccattaacccta 11761080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 39846606 - 39846639
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  39846606 ctatattacagggggtaaagcaccattaacccta 39846639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 46994117 - 46994150
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  46994117 ctatattacagggggtaaagcaccattaacccta 46994150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 48418685 - 48418652
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  48418685 ctatattacagggggtaaagcaccattaacccta 48418652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 49166831 - 49166794
Alignment:
Q  126 atctatattacaggggg-taaaacaccattaaccctat 162  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  49166831 atctatattacaggggggtaaaacaccattaaccctat 49166794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 4548815 - 4548847
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||| ||||||||||    
T  4548815 ctatattacagggggtaaaacatcattaaccct 4548847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 17261056 - 17261024
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  17261056 ctatattacagggggtaaagcaccattaaccct 17261024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 18946056 - 18946088
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||| ||||||||||    
T  18946056 ctatattacagggggtaaaacatcattaaccct 18946088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 30908786 - 30908814
Alignment:
Q  132 attacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||||||||||    
T  30908786 attacagggggtaaaacaccattaaccct 30908814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 35359503 - 35359471
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  35359503 ctatattacagggggtaaagcaccattaaccct 35359471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 35434098 - 35434130
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  35434098 ctatattacagggggtaaagcaccattaaccct 35434130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 38703329 - 38703361
Alignment:
Q  129 tatattacagggggtaaaacaccattaacccta 161  Q
    |||||||||||||||||||||| ||||||||||    
T  38703329 tatattacagggggtaaaacactattaacccta 38703361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 52491604 - 52491572
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||| ||||||||||||||||||||||    
T  52491604 ctatattacatggggtaaaacaccattaaccct 52491572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 53667711 - 53667679
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  53667711 ctatattacagggggtaaatcaccattaaccct 53667679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 54012389 - 54012357
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||| ||||||||||||||||||||||    
T  54012389 ctatattacatggggtaaaacaccattaaccct 54012357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 54012614 - 54012646
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  54012614 ctatattacagggggtaaagcaccattaaccct 54012646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 55090269 - 55090301
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  55090269 ctatattacagggggtaaagcaccattaaccct 55090301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 29709 - 29741
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||||||||||||||    
T  29709 ctatattacagggggtaaaacaccattaaccct 29741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 14985335 - 14985367
Alignment:
Q  129 tatattacagggggtaaaacaccattaacccta 161  Q
    |||||||||||||||||||||||||||||||||    
T  14985335 tatattacagggggtaaaacaccattaacccta 14985367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 159
Target Start/End: Complemental strand, 2181348 - 2181317
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccc 159  Q
    ||||||||||||||||||||||||||||||||    
T  2181348 ctatattacagggggtaaaacaccattaaccc 2181317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 8238002 - 8238037
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctatt 163  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8238002 ctatattacagggggtaaaacactattaaccctatt 8238037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 160
Target Start/End: Complemental strand, 13420219 - 13420188
Alignment:
Q  129 tatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||||||||||||    
T  13420219 tatattacagggggtaaaacaccattaaccct 13420188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 158
Target Start/End: Complemental strand, 14924995 - 14924965
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacc 158  Q
    |||||||||||||||||||||||||||||||    
T  14924995 ctatattacagggggtaaaacaccattaacc 14924965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 158
Target Start/End: Original strand, 15959619 - 15959649
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacc 158  Q
    |||||||||||||||||||||||||||||||    
T  15959619 ctatattacagggggtaaaacaccattaacc 15959649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 7017101 - 7017060
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctatttgaatt 169  Q
    ||||||||||||||||||| |||||||||||||  |||||||    
T  7017101 ctatattacagggggtaaagcaccattaacccttattgaatt 7017060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 11336686 - 11336649
Alignment:
Q  128 ctatattaca-gggggtaaaacaccattaaccctattt 164  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11336686 ctatattacaagggggtaaaacaccattaaccctattt 11336649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 33552796 - 33552829
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    |||||||||||||| |||||||||||||||||||    
T  33552796 ctatattacaggggataaaacaccattaacccta 33552829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 1309817 - 1309785
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  1309817 ctatattacagggggtaaatcaccattaaccct 1309785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 2033124 - 2033156
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||| ||||||||||||||||||||||||    
T  2033124 ctatattatagggggtaaaacaccattaaccct 2033156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 10545862 - 10545830
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  10545862 ctatattacagggggtaaaacactattaaccct 10545830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 161
Target Start/End: Complemental strand, 15542901 - 15542873
Alignment:
Q  133 ttacagggggtaaaacaccattaacccta 161  Q
    |||||||||||||||||||||||||||||    
T  15542901 ttacagggggtaaaacaccattaacccta 15542873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 17884345 - 17884377
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||| |||||||||||||||||||||||    
T  17884345 ctatattactgggggtaaaacaccattaaccct 17884377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 25562185 - 25562153
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  25562185 ctatattacagggggtaaagcaccattaaccct 25562153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 26101699 - 26101667
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  26101699 ctatattacagggggtaaagcaccattaaccct 26101667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 31826246 - 31826214
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  31826246 ctatattacagggggtaaagcaccattaaccct 31826214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 33225473 - 33225441
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  33225473 ctatattacagggggtaaagcaccattaaccct 33225441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 5661897 - 5661933
Alignment:
Q  125 gatctatattacagggggtaaaacaccattaacccta 161  Q
    |||||||||||||||||||||| ||||||||||||||    
T  5661897 gatctatattacagggggtaaagcaccattaacccta 5661933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 163
Target Start/End: Complemental strand, 21039896 - 21039861
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctatt 163  Q
    ||||||||||||||||||||||| ||||||||||||    
T  21039896 ctatattacagggggtaaaacactattaaccctatt 21039861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 39172471 - 39172432
Alignment:
Q  206 ttcaaaagttgtcgtacaaataattgctcgaataacacac 245  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  39172471 ttcaaaaattgtcgtacaaataattgctcgaataaaacac 39172432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 18254186 - 18254148
Alignment:
Q  125 gatctatattacaggggg-taaaacaccattaaccctat 162  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  18254186 gatctatattacagggggataaaacaccattaaccctat 18254148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 159
Target Start/End: Complemental strand, 31601779 - 31601749
Alignment:
Q  129 tatattacagggggtaaaacaccattaaccc 159  Q
    |||||||||||||||||||||||||||||||    
T  31601779 tatattacagggggtaaaacaccattaaccc 31601749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 39089812 - 39089845
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    |||||||||||||||||||||||| |||||||||    
T  39089812 ctatattacagggggtaaaacaccgttaacccta 39089845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 2724515 - 2724483
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  2724515 ctatattacagggggtaaagcaccattaaccct 2724483  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 3214869 - 3214901
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||||| ||||||||    
T  3214869 ctatattacagggggtaaaacacctttaaccct 3214901  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 4413958 - 4413926
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  4413958 ctatattacagggggtaaaacactattaaccct 4413926  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 7899951 - 7899983
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    |||||||||||||||||||||| ||||||||||    
T  7899951 ctatattacagggggtaaaacatcattaaccct 7899983  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 12148252 - 12148284
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  12148252 ctatattacagggggtaaaacactattaaccct 12148284  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 17886047 - 17886083
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctattt 164  Q
    |||||||||||||||||||| || |||||||||||||    
T  17886047 ctatattacagggggtaaaatactattaaccctattt 17886083  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 18254394 - 18254426
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  18254394 ctatattacagggggtaaatcaccattaaccct 18254426  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 25962833 - 25962801
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  25962833 ctatattacagggggtaaaacactattaaccct 25962801  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 31312797 - 31312829
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  31312797 ctatattacagggggtaaaacactattaaccct 31312829  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 36518885 - 36518921
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccctattt 164  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  36518885 ctatattacagggggtaaagcaccattaacccaattt 36518921  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 37082300 - 37082332
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||||||| |||||||||    
T  37082300 ctatattacagggggtaaaacactattaaccct 37082332  T

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Target: scaffold0053 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 29903 - 29936
Alignment:
Q  128 ctatattacagggggtaaaacaccattaacccta 161  Q
    ||||||||||||||||||| ||||||||||||||    
T  29903 ctatattacagggggtaaagcaccattaacccta 29936  T

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Target: scaffold0192 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 14473 - 14505
Alignment:
Q  128 ctatattacagggggtaaaacaccattaaccct 160  Q
    ||||||||||||||||||| |||||||||||||    
T  14473 ctatattacagggggtaaagcaccattaaccct 14505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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