View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2375_high_28 (Length: 265)
Name: NF2375_high_28
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2375_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 55907339 - 55907574
Alignment:
| Q |
17 |
agaaacacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttga |
116 |
Q |
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| T |
55907339 |
agaaacacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttga |
55907438 |
T |
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| Q |
117 |
aatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55907439 |
aatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtct |
55907538 |
T |
|
| Q |
217 |
cttccaaaggttcacctacattacctaccttgatct |
252 |
Q |
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| T |
55907539 |
cttccaaaggttcacctacattacctaccttgatct |
55907574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 1036081 - 1036316
Alignment:
| Q |
17 |
agaaacacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttga |
116 |
Q |
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| T |
1036081 |
agaaacacaactgtgacagctgtaaataattgttatttatctgataattgttcggaatatgtcttcacatttctgatcaatgacaatcctcgctacttga |
1036180 |
T |
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| Q |
117 |
aatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtct |
216 |
Q |
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| T |
1036181 |
aatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtct |
1036280 |
T |
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| Q |
217 |
cttccaaaggttcacctacattacctaccttgatct |
252 |
Q |
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| T |
1036281 |
cttccaaaggttcaccaacattacctaccttgatct |
1036316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 1036422 - 1036510
Alignment:
| Q |
164 |
cttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttccaaaggttcacctacattacctaccttgatct |
252 |
Q |
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| T |
1036422 |
cttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctcttccaaaggttcaccaacattacctaccttgatct |
1036510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 44575173 - 44575224
Alignment:
| Q |
108 |
gctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaa |
159 |
Q |
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| T |
44575173 |
gctacttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaa |
44575224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 41900247 - 41900315
Alignment:
| Q |
109 |
ctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct |
177 |
Q |
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| T |
41900247 |
ctacttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctct |
41900315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 6403901 - 6403848
Alignment:
| Q |
107 |
cgctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaac |
160 |
Q |
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| T |
6403901 |
cgctacttgaaatctctctcagccgtatccaaacagttcctctctatcaccaac |
6403848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 513428 - 513493
Alignment:
| Q |
112 |
cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct |
177 |
Q |
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| T |
513428 |
cttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct |
513493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 10168825 - 10168865
Alignment:
| Q |
131 |
gtctccaaacagtttctctcagtcaccaacactcttcgatt |
171 |
Q |
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| T |
10168825 |
gtctccaaacagttcctctccatcaccaacactcttcgatt |
10168865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 10176350 - 10176390
Alignment:
| Q |
131 |
gtctccaaacagtttctctcagtcaccaacactcttcgatt |
171 |
Q |
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| T |
10176350 |
gtctccaaacagttcctctccatcaccaacactcttcgatt |
10176390 |
T |
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