View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2375_high_3 (Length: 715)

Name: NF2375_high_3
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2375_high_3
NF2375_high_3
[»] chr8 (1 HSPs)
chr8 (19-703)||(37320244-37320928)


Alignment Details
Target: chr8 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 19 - 703
Target Start/End: Complemental strand, 37320928 - 37320244
Alignment:
Q  19 ataagttagtccattcttcgtcattagcgtgacacatcaaacctatttccatcatcatattcttaattctctctcacaattcatttgcaattcttttgtg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37320928 ataagttagtccattcttcgtcattagcgtgacacatcaaacctatttccatcatcatattcttaattctctctcacaattcatttgcaattcttttgtg 37320829  T
Q  119 gaaacaatgcatctagaggtacatggaaaaacatgttacagtgattgtttctgttttagcatattagtggaaaacatagtttggtttgattcagtcatca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37320828 gaaacaatgcatctagaggtacatggaaaaacatgttacagtgattgtttctgttttagcatattagtggaaaacatagtttggtttgattcagtcatca 37320729  T
Q  219 ttaataggcgcctgagttatttttcttggtcttctcttctctttcatattaactagttttggaaatttcattactctatttattttggttcctatataaa 318  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37320728 ttaataggcgcctgagttatttttcttggtcttctcttcactttcatattaactagttttggaaatttcattactctatttattttggttcctatataaa 37320629  T
Q  319 cataaacatattattacatatatgtatgtattgaacaatttgttttgtgtttgtggttcagctggatacttttacagctttggttgtggttctgtgtttc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37320628 cataaacatattattacatatatgtatgtattgaacaatttgttttgtgtttgtggttcagctggatacttttacagctttggttgtggttctgtgtttc 37320529  T
Q  419 cttgcattgatttttaaggagacggtaatgggaggtaagagttcaaaagggtctcggaggagagatgtaaattcatcatcaccatcaacatcatatggct 518  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37320528 cttgcattgattttcaaggagacggtaatgggaggtaagagttcaaaagggtctcggaggagagatgtaaattcatcatcaccatcaacatcatatggct 37320429  T
Q  519 ctgttggttcttcttcatcttcatgggaaaataactatggatatccacaatcaacatatccataccctccacagcaaaatccatatcaaaggcctaatca 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37320428 ctgttggttcttcttcatcttcatgggaaaataactatggatatccacaatcaacatatccataccctccacagcaaaatccatatcaaaggcctaatca 37320329  T
Q  619 ccgtccccctacacaggctccctctcatgattattcacggccgaataggaagttggataggagatattcaaggattgctgatgat 703  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37320328 ccgtccccctacacaggctccctctcatgattattcacggccgaataggaagttggataggagatattcaaggattgctgatgat 37320244  T

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