View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2375_high_36 (Length: 212)
Name: NF2375_high_36
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2375_high_36 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 40274638 - 40274848
Alignment:
| Q |
2 |
atatatattaatctttcttcttgtcaagagcacctacaagtatatatacttccccgtctatctatctatctgctccgagcctccaaccctttgttgttgg |
101 |
Q |
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| T |
40274638 |
atatatattaatctttcttcttgtcaagagcacctacaagtatatatacttccccatctatctatctatctgctctgaggctctaaccctttgttgttgg |
40274737 |
T |
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| Q |
102 |
ctttggtttgaagctaattaagagacaattttctttccctcatacagtacatcatttctgcatgctgcaacatgtgtgagttcaatttccttcactcaat |
201 |
Q |
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| T |
40274738 |
ctttggtttgaagctaattaagagacaattttctttccctcatacagtacatcatttctgcatgctgcaacatgtgtgagttcaatttcgttcactcaat |
40274837 |
T |
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| Q |
202 |
tctcctctatc |
212 |
Q |
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| T |
40274838 |
tctcctctatc |
40274848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 40281643 - 40281689
Alignment:
| Q |
3 |
tatatattaatctttcttcttgtcaagagcacctacaagtatatata |
49 |
Q |
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| T |
40281643 |
tatatattaatctctcttcttgtcaagagagcctacaattatatata |
40281689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 40599191 - 40599147
Alignment:
| Q |
149 |
tacatcatttctgcatgctgcaacatgtgtgagttcaatttcctt |
193 |
Q |
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| T |
40599191 |
tacatcctttatgcatgctgcaacatgtgtgagttccaattcctt |
40599147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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