View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2375_high_4 (Length: 544)

Name: NF2375_high_4
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2375_high_4
NF2375_high_4
[»] chr5 (2 HSPs)
chr5 (1-533)||(12870234-12870765)
chr5 (1-64)||(43469538-43469601)
[»] chr6 (1 HSPs)
chr6 (1-533)||(27765391-27765929)
[»] chr1 (5 HSPs)
chr1 (386-533)||(31770374-31770520)
chr1 (448-533)||(7607814-7607899)
chr1 (1-64)||(12606569-12606632)
chr1 (1-64)||(46566648-46566711)
chr1 (489-533)||(14184934-14184978)
[»] chr4 (2 HSPs)
chr4 (386-532)||(41810794-41810939)
chr4 (1-64)||(23538151-23538214)
[»] scaffold0096 (1 HSPs)
scaffold0096 (390-522)||(28513-28643)
[»] chr3 (1 HSPs)
chr3 (390-522)||(12537939-12538069)
[»] chr7 (2 HSPs)
chr7 (1-64)||(10646041-10646104)
chr7 (457-519)||(6666722-6666784)
[»] scaffold0238 (1 HSPs)
scaffold0238 (4-64)||(5323-5383)


Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 12870234 - 12870765
Alignment:
Q  1 attaatgctaatctcaactgccacccacactctaaatctcagcctttgatctgatgacctttcaagcttgcattaagtgctgaccctatctgccaactac 100  Q
    |||||||||||  |||||  ||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12870234 attaatgctaacttcaacaaccaaccacaccctaaatctcagcctttgatctgatgacttttcaagcttgcattaagtgctgaccctatctgccaactac 12870333  T
Q  101 ccaccaatgaaccttcaatgtccattcagttttcaaatgaatttgtattacccgaggtgtctctctatctccccaatctctcaacttttttgctattccc 200  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12870334 ccactaatgaaccttcaatgtccattcagttttcaaatgaattcgtattacccgaggtgtctctctatctccccaatctctcaacttttttgctattccc 12870433  T
Q  201 attcactcttatgttttcaatgccaaattctttcctcctctaactccttcttctttatgagagagcgatgaagtacctcatgtgtcgtgtcttgcttgct 300  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  12870434 attcactcttatgttttcaatgccaaactctttcctcctctaactccttcttttttctgagagagcgatgaagtacctcatgtgtcgtgtcttgcttgct 12870533  T
Q  301 gttcatttggttatgcaaaccggattgtaaatcggtgaacttctaacattctcaagaaaatcggtgaagtttattttgatgaaattgtgaggattggagt 400  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12870534 gttcatttggttatgcaaaccggattgtaaatcggtgaacttgtaactttctcaagaaaatcggtgaagtttattttgatgaaattgtgaggattggagt 12870633  T
Q  401 acgatggttgggatggaatttcttgaatcaattttaggtacccccttctctcactattttcctctaatttctatcaatttgttagggtttagaaatctct 500  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12870634 acgattgttgggatggaatttcttgaatcaattttaggta-ccccttctctcactatttttctctaatttctatcaatttgttagggtttagaaatctct 12870732  T
Q  501 accactactttatatttgcaaatcatctttctt 533  Q
    |||||||||||||||||||||||||||||||||    
T  12870733 accactactttatatttgcaaatcatctttctt 12870765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 43469601 - 43469538
Alignment:
Q  1 attaatgctaatctcaactgccacccacactctaaatctcagcctttgatctgatgacctttca 64  Q
    ||||||| |||| ||| |||||| |||||| |||||||||||||||||||| || |||||||||    
T  43469601 attaatgttaatttcatctgccaaccacaccctaaatctcagcctttgatcggaagacctttca 43469538  T

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Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 27765391 - 27765929
Alignment:
Q  1 attaatgctaatctcaactgccacccacactctaaatctcagcctttgatctgatgacctttcaagcttgcattaagtgctgaccctatctgccaactac 100  Q
    ||||||||||||||||||||||| ||||||  ||||||| || ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  27765391 attaatgctaatctcaactgccaaccacaccataaatcttagtctttgatctgatgacctttcaaatttgcattaagtgctgaccctatctgccaactac 27765490  T
Q  101 ccac------caatgaaccttcaatgtccattcagttttcaaatgaatttgtattacccgaggtgtctctctatctccccaatctctcaacttttttgct 194  Q
    ||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27765491 ccactaacaccaatgaaccttcaatgtccattcagttttcaaatgaatttgtattacccgaggtgtctctctatctccccaatctctcaacttttttgct 27765590  T
Q  195 attcccattcactcttatgttttcaatgccaaattctttcctcctctaactccttcttctttatgagagagcgatgaagtacctcatgtgtcgtgtcttg 294  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  27765591 attcccattcactcttatgttttcaatgccaaactctttcctcctctaactccttcttctttctgagagagcgatgaagtacctcacgtgtcgtgtcttg 27765690  T
Q  295 cttgctgttcatttggttatgcaaaccggattgtaaatcggtgaacttctaacattctcaagaaaatcggtgaagtttattttgatgaaattgtgaggat 394  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  27765691 cttgctgttcatttggttatgcaaaccggattgtaaataggtgaacttataactttcttaagaaaatcggtgaagtttattttgatgaaattgtgaggat 27765790  T
Q  395 tggagtacgatggttgggatggaatttcttgaatcaattttaggtacccccttctctcactattttcctctaatttctatcaatttgttagggtttagaa 494  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  27765791 tgaagtacgatggttgggatggaatttcttgaatcaattttaggtacccccttctctcactatttttctctaatttctatcaatttgttagggtttggaa 27765890  T
Q  495 atctctaccactactttatatttgcaaatcatctttctt 533  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  27765891 atctctactactactttatatttgcaaatcatctttctt 27765929  T

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Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 386 - 533
Target Start/End: Complemental strand, 31770520 - 31770374
Alignment:
Q  386 tgtgaggattggagtacgatggttgggatggaatttcttgaatcaattttaggtacccccttctctcactattttcctctaatttctatcaatttgttag 485  Q
    ||||||||||||||||||||||||  ||| |||| | ||| |||| |||||||||| | || ||||||||||||| |||||||||||||||||||||||     
T  31770520 tgtgaggattggagtacgatggttcagattgaatattttgcatcagttttaggtactcact-ctctcactatttttctctaatttctatcaatttgttaa 31770422  T
Q  486 ggtttagaaatctctaccactactttatatttgcaaatcatctttctt 533  Q
    |||||||||||||||||||| ||||||| |||||||| ||| ||||||    
T  31770421 ggtttagaaatctctaccaccactttatctttgcaaaacatttttctt 31770374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 448 - 533
Target Start/End: Complemental strand, 7607899 - 7607814
Alignment:
Q  448 ctctcactattttcctctaatttctatcaatttgttagggtttagaaatctctaccactactttatatttgcaaatcatctttctt 533  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| ||| ||||||    
T  7607899 ctctcactatttttctctaatttctatcaatttgttaaggtttagaaatctctaccaccactttatctttgcaaaacatttttctt 7607814  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 12606632 - 12606569
Alignment:
Q  1 attaatgctaatctcaactgccacccacactctaaatctcagcctttgatctgatgacctttca 64  Q
    ||||||||||||| || |||||| |||||| |||||||||||||||||||||||||||||||||    
T  12606632 attaatgctaatcccatctgccaaccacaccctaaatctcagcctttgatctgatgacctttca 12606569  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 46566648 - 46566711
Alignment:
Q  1 attaatgctaatctcaactgccacccacactctaaatctcagcctttgatctgatgacctttca 64  Q
    |||||||||||||||| |||||| |||||  |||||||||||||||||||||||||||||||||    
T  46566648 attaatgctaatctcatctgccaaccacatcctaaatctcagcctttgatctgatgacctttca 46566711  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 533
Target Start/End: Original strand, 14184934 - 14184978
Alignment:
Q  489 ttagaaatctctaccactactttatatttgcaaatcatctttctt 533  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||||||    
T  14184934 ttagaaatctctaccaccactttatctttgcaaaacatttttctt 14184978  T

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Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 386 - 532
Target Start/End: Original strand, 41810794 - 41810939
Alignment:
Q  386 tgtgaggattggagtacgatggttgggatggaatttcttgaatcaattttaggtacccccttctctcactattttcctctaatttctatcaatttgttag 485  Q
    ||||||||||||||||||||||||  ||| |||| | ||| |||| |||||||||| | || ||||||||||||| |||||||||||||||||||||||     
T  41810794 tgtgaggattggagtacgatggttcagattgaatattttgcatcagttttaggtactcact-ctctcactatttttctctaatttctatcaatttgttaa 41810892  T
Q  486 ggtttagaaatctctaccactactttatatttgcaaatcatctttct 532  Q
    |||||||||||||||| ||| ||||||| |||||||| ||| |||||    
T  41810893 ggtttagaaatctctaacaccactttatctttgcaaaacatttttct 41810939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 23538214 - 23538151
Alignment:
Q  1 attaatgctaatctcaactgccacccacactctaaatctcagcctttgatctgatgacctttca 64  Q
    |||||||||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||    
T  23538214 attaatgctaatctcatctgccaaccacaccctaaatctcggcctttgatctgatgacctttca 23538151  T

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Target: scaffold0096 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 390 - 522
Target Start/End: Original strand, 28513 - 28643
Alignment:
Q  390 aggattggagtacgatggttgggatggaatttcttgaatcaattttaggtacccccttctctcactattttcctctaatttctatcaatttgttagggtt 489  Q
    ||||||||||||| ||||||  |||||||| | ||| |||| |||||||||| |||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  28513 aggattggagtac-atggttcagatggaatattttgtatcagttttaggtactccct-ctctcactatttttctctaatttctatcaatttgttaaggtt 28610  T
Q  490 tagaaatctctaccactactttatatttgcaaa 522  Q
    |||||||||||||||| ||||||| ||||||||    
T  28611 tagaaatctctaccaccactttatctttgcaaa 28643  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 390 - 522
Target Start/End: Complemental strand, 12538069 - 12537939
Alignment:
Q  390 aggattggagtacgatggttgggatggaatttcttgaatcaattttaggtacccccttctctcactattttcctctaatttctatcaatttgttagggtt 489  Q
    ||||||||||||| ||||||  |||||||| | ||| |||| |||||||||| || | ||||||||||||| ||||||||||||||||||||||| ||||    
T  12538069 aggattggagtac-atggtttagatggaatattttgtatcagttttaggtactccat-ctctcactatttttctctaatttctatcaatttgttaaggtt 12537972  T
Q  490 tagaaatctctaccactactttatatttgcaaa 522  Q
    |||||||||| ||||| ||||||| ||||||||    
T  12537971 tagaaatctccaccacaactttatctttgcaaa 12537939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10646104 - 10646041
Alignment:
Q  1 attaatgctaatctcaactgccacccacactctaaatctcagcctttgatctgatgacctttca 64  Q
    |||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||| ||||    
T  10646104 attaatgctaatctcatctgccaaccacaccctaaatctcagcctttgatctgatgaccattca 10646041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 519
Target Start/End: Complemental strand, 6666784 - 6666722
Alignment:
Q  457 ttttcctctaatttctatcaatttgttagggtttagaaatctctaccactactttatatttgc 519  Q
    ||||||||| |||||||||||||| |||||||||| |||||||||| || | ||||| |||||    
T  6666784 ttttcctctcatttctatcaatttattagggtttacaaatctctactaccaatttatctttgc 6666722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 5323 - 5383
Alignment:
Q  4 aatgctaatctcaactgccacccacactctaaatctcagcctttgatctgatgacctttca 64  Q
    ||||| |||| || |||||| |||||| |||||||||||||||||||||||||||||||||    
T  5323 aatgcaaatcccatctgccaaccacaccctaaatctcagcctttgatctgatgacctttca 5383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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