View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2375_high_6 (Length: 501)

Name: NF2375_high_6
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2375_high_6
NF2375_high_6
[»] chr1 (3 HSPs)
chr1 (1-456)||(44727930-44728379)
chr1 (11-84)||(44728380-44728453)
chr1 (13-84)||(44728462-44728533)
[»] chr6 (4 HSPs)
chr6 (33-85)||(12163615-12163667)
chr6 (35-85)||(12163170-12163220)
chr6 (32-85)||(12192215-12192268)
chr6 (33-85)||(12163456-12163508)


Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 44728379 - 44727930
Alignment:
Q  1 gcatcacgtcagccctaagccctactaccactctccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagttcaccctccttacact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44728379 gcatcacgtcagccctaagccctactaccactctccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagttcaccctccttacact 44728280  T
Q  101 ccaaaaccagtttaccactctccaccagttcatcctccctacactccacacccagtttatcactctcctccaccaccagttcacagttacatctatgcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44728279 ccaaaaccagtttaccactctccaccagttcatcctccctacactccacacccagtttatcactctcctccaccaccagttcacagttacatctatgcat 44728180  T
Q  201 ctccaccccctccttaccactcttagatagtggtcgatttaccatatctctatgcatgtaagcttttttatttaatctcctctacaatattattatcgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44728179 ctccaccccctccttaccactcttagatagtggtcgatttaccatatctctatgcatgtaagcttttttatttaatctcctctacaatattattatcgca 44728080  T
Q  301 taatttatttctatttcgtcaccttcgtattgcagtgtaattcctccatcattannnnnnnnnnnnnnnnnnnnttctttttaatatttgtctgtcaatt 400  Q
    |||||||      |||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||    
T  44728079 taattta------tttcgtcaccttcgtattgcagtgtaattcctccatcattaaatataatataatataatatttctttttaatatttgtctgtcaatt 44727986  T
Q  401 atttatgagacacattatacattaactatctactgacaaaaatactcttatatact 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44727985 atttatgagacacattatacattaactatctactgacaaaaatactcttatatact 44727930  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 44728453 - 44728380
Alignment:
Q  11 agccctaagccctactaccactctccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagt 84  Q
    |||||||| || |||||||| || ||||||||||||||||||||||||||||| || || ||||| ||||||||    
T  44728453 agccctaaaccttactaccattccccaccaccaccaaagaagccatacaaatattcctctcctcctccaccagt 44728380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 44728533 - 44728462
Alignment:
Q  13 ccctaagccctactaccactctccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagt 84  Q
    |||||| || |||||||| ||||||||||| |||||||| ||||||||||| || || ||||||||||||||    
T  44728533 ccctaaaccttactaccattctccaccacccccaaagaaaccatacaaatattcttctcctccaccaccagt 44728462  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 12163615 - 12163667
Alignment:
Q  33 ctccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagtt 85  Q
    |||||||||||||||| |||||||| |||||| |||| || ||||||||||||    
T  12163615 ctccaccaccaccaaaaaagccatataaatacccatctcccccaccaccagtt 12163667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 12163170 - 12163220
Alignment:
Q  35 ccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagtt 85  Q
    |||||||| ||||||||||||||||||||| | || |||||||| ||||||    
T  12163170 ccaccacctccaaagaagccatacaaatacgcttctcctccacctccagtt 12163220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 12192215 - 12192268
Alignment:
Q  32 tctccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagtt 85  Q
    |||||||||||||||   ||||||||||||||| | ||||| ||||||||||||    
T  12192215 tctccaccaccaccatctaagccatacaaatacgcttccccaccaccaccagtt 12192268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 12163456 - 12163508
Alignment:
Q  33 ctccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagtt 85  Q
    ||||||||||||| ||||||||||| |||||| |||| || ||||| ||||||    
T  12163456 ctccaccaccacctaagaagccatataaatacccatctccaccaccgccagtt 12163508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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