View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2375_low_15 (Length: 374)
Name: NF2375_low_15
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2375_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 32832561 - 32832913
Alignment:
| Q |
7 |
gagagatgaattgctgcacctcccatcctaaagatgcagttaagaggcaactttgatttttcattaccaggataccaaccatttgacagaatctctgtgc |
106 |
Q |
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|||||| |||||||||||| |||||| |||||| | ||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
32832561 |
gagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaactttgatctttctttaccgggataccaaccatttgacagaatctctgtgc |
32832660 |
T |
|
| Q |
107 |
ttagaacaataacattagtgtttttgtgaactcggagaagattatgagccaaatcaatacaaatagcactagcactgcaccccataccagagacattata |
206 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32832661 |
ttagaacaataacattagcatttttgtgaactcggagaagattatgagctaaatcaatacaaatagcactagcactgcaccccataccagagacattata |
32832760 |
T |
|
| Q |
207 |
gcttttaatgtcacttctcatacaatatttgttaacaacaattgttgttaaagaaggcgagggacaaaagccactgcagtttaagataagtatgtctata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
32832761 |
gcttttaatgtcacttctcatacaatatttgttaacaacaatagctgttaaagaaggtgagggacaaaagccactgcaatttaagataagcatgtctata |
32832860 |
T |
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| Q |
307 |
tcggaaggtaaaatattggtttttgcaaaaagatcatgcatgatagggaaaag |
359 |
Q |
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||| ||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
32832861 |
tcgataggtaaaatattggtttttgcgaaaagatcatccatgatagggaaaag |
32832913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 32845842 - 32846194
Alignment:
| Q |
7 |
gagagatgaattgctgcacctcccatcctaaagatgcagttaagaggcaactttgatttttcattaccaggataccaaccatttgacagaatctctgtgc |
106 |
Q |
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| T |
32845842 |
gagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaactttgatctttctttaccgggataccaaccatttgacagaatctctgtgc |
32845941 |
T |
|
| Q |
107 |
ttagaacaataacattagtgtttttgtgaactcggagaagattatgagccaaatcaatacaaatagcactagcactgcaccccataccagagacattata |
206 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32845942 |
ttagaacaataacattagcatttttgtgaactcggagaagattatgagctaaatcaatacaaatagcactagcactgcaccccataccagagacattata |
32846041 |
T |
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| Q |
207 |
gcttttaatgtcacttctcatacaatatttgttaacaacaattgttgttaaagaaggcgagggacaaaagccactgcagtttaagataagtatgtctata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
32846042 |
gcttttaatgtcacttctcatacaatatttgttaacaacaatagctgttaaagaaggtgagggacaaaagccactgcaatttaagataagcatgtctata |
32846141 |
T |
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| Q |
307 |
tcggaaggtaaaatattggtttttgcaaaaagatcatgcatgatagggaaaag |
359 |
Q |
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||| ||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
32846142 |
tcgataggtaaaatattggtttttgcgaaaagatcatccatgatagggaaaag |
32846194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 359
Target Start/End: Complemental strand, 17932082 - 17931730
Alignment:
| Q |
7 |
gagagatgaattgctgcacctcccatcctaaagatgcagttaagaggcaactttgatttttcattaccaggataccaaccatttgacagaatctctgtgc |
106 |
Q |
| |
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|||||| |||||||||||| ||||| |||||| | ||||||||| ||||||||||| |||| ||||| ||||||||||||||||||| ||||||||||| |
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| T |
17932082 |
gagagaagaattgctgcactacccattctaaagctacagttaagatgcaactttgatctttctttaccgggataccaaccatttgacaaaatctctgtgc |
17931983 |
T |
|
| Q |
107 |
ttagaacaataacattagtgtttttgtgaactcggagaagattatgagccaaatcaatacaaatagcactagcactgcaccccataccagagacattata |
206 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17931982 |
ttagaacaataacattagcgtttttgtgaactcggagaagattatgagctaaatcaatacaaataacactagcactgcaccccataccagagacattata |
17931883 |
T |
|
| Q |
207 |
gcttttaatgtcacttctcatacaatatttgttaacaacaattgttgttaaagaaggcgagggacaaaagccactgcagtttaagataagtatgtctata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17931882 |
gcttttaatgtcacttctcatacaatatttgttaacaacaatagatgttaaagaaggcgagggacaaaagccactgcaatttaagataagtatgtctata |
17931783 |
T |
|
| Q |
307 |
tcggaaggtaaaatattggtttttgcaaaaagatcatgcatgatagggaaaag |
359 |
Q |
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|| ||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
17931782 |
tcaataggtaaaatattggtttttacaaaaagatcatccatgatagggaaaag |
17931730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 46188597 - 46188252
Alignment:
| Q |
14 |
gaattgctgcacctcccatcctaaagatgcagttaagaggcaactttgatttttcattaccaggataccaaccatttgacagaatctctgtgcttagaac |
113 |
Q |
| |
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|||||||||||| |||||| ||||||| ||||||| | |||||||||||||||| ||||| ||||||||||| | |||| |||||||||||||| || |
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| T |
46188597 |
gaattgctgcacttcccattctaaagagacagttaataagcaactttgatttttccttacctggataccaaccgtgggacaaaatctctgtgcttaagac |
46188498 |
T |
|
| Q |
114 |
aataacattagtgtttttgtgaactcggagaagattatgagccaaatcaatacaaatagcactagcactgcaccccataccagagacattatagctttta |
213 |
Q |
| |
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||||||||||| ||||| |||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
46188497 |
aataacattagattttttatgaactttgagaagattctgagctaaatcaatacaaatagcactagcactacaccccataccagagacattataactttta |
46188398 |
T |
|
| Q |
214 |
atgtcacttctcatacaatatttgttaacaacaattgttgttaaagaaggcgagggacaaaagccactgcagtttaagataagtatgtctatatcggaag |
313 |
Q |
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||||||||||||||| |||||||||||| ||||| | ||||||||||| || | |||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
46188397 |
atgtcacttctcatagcatatttgttaactacaatggaagttaaagaaggtgaagaacaaaagccactacagtttaagataagtatgtctatatcaaaag |
46188298 |
T |
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| Q |
314 |
gtaaaatattggtttttgcaaaaagatcatgcatgatagggaaaag |
359 |
Q |
| |
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|| ||| || ||||||||||||||||||| |||||||||||||| |
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| T |
46188297 |
gtgaaagctttgtttttgcaaaaagatcatcaatgatagggaaaag |
46188252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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