View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2375_low_16 (Length: 371)
Name: NF2375_low_16
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2375_low_16 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 41158621 - 41158254
Alignment:
| Q |
1 |
cagtaacctctttcaacctcttcaccaccacagtggttatatcctccaaagcagccttgtatgttgtaccaaaattaccttttccaagaatctgagcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41158621 |
cagtaacctctttcaacctcttcaccaccacagtggttatatcctccaaagcagccttgtatgttgtaccaaaattaccttttccaagaatctgagcaga |
41158522 |
T |
|
| Q |
101 |
agctctcaaaaggtcctctagatcaaatgcaagattgcaatcctcaaaaaagactattttctttttatcttgatcactagcagaagattctgctttcatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41158521 |
agctctcaaaaggtcctctagatcaaatgcaagattgcaatcctcaaaaaagactattttctttttatcttgatcactagcagaagattctgctt---tc |
41158425 |
T |
|
| Q |
201 |
atagatacttcttttttcttggatttcttcacaggttcctttacacctgcagcatggtcacagcagcacaaaaccatgatacctgcaatccaagtgcaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41158424 |
atagatacttcttttttcttggatttcttcacaggttcctttacacctgcagcatggtcacagcagcacaaaaccatgatacctgcaatccaagtgcaca |
41158325 |
T |
|
| Q |
301 |
aacttcaatgatgatttccaatctttgattttataaaatgatgtaannnnnnnnacacattcttccatatt |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41158324 |
aacttcaatgatgatttccaatctttgattttataaaatgatgtaattttttttacacattcttccatatt |
41158254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 41154734 - 41154462
Alignment:
| Q |
1 |
cagtaacctctttcaacctcttcaccaccacagtggttatatcctccaaagcagccttgtatgttgtaccaaaattaccttttccaagaatctgagcaga |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| |||||| | ||||||||| ||||||||||||||| |||| |||||||||||| ||| || |
|
|
| T |
41154734 |
cagtaacctctttcaacctcttcactgccaccgtggtcgcatcctctatagcagccttatatgttgtaccaaaagtaccccttccaagaatctcagctga |
41154635 |
T |
|
| Q |
101 |
agctctcaaaaggtcctctagatcaaatgcaagattgcaatcctcaaaaaagactattttctttttatcttgatcactagcagaagattctgctttcatc |
200 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||| | ||| ||||||||||| |||| || |
|
|
| T |
41154634 |
agctctcaaaagatcctctaaatcaaatgcaagattacaatcctcaaaaaagactatcttgtttttatctcg---acttgcagaagattcggctt---tc |
41154541 |
T |
|
| Q |
201 |
atagatacttcttttttcttggatttcttcacaggttcctttacacct---gcagcatggtcacagcagcacaaaaccatga |
279 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| ||| ||||||||| ||||||| |||| |||||||||||| ||||| |
|
|
| T |
41154540 |
atagatacatcttttttcttggat---ttcacagattcttttacacctgcagcagcatagtcatagcagcacaaaatcatga |
41154462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University