View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2375_low_24 (Length: 328)
Name: NF2375_low_24
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2375_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 34215572 - 34215258
Alignment:
| Q |
1 |
tgcaatgaagagtctatttttaacatttacactaacactcannnnnnnattaggtgaaactcgtgtgagtctttcatcattttatgtaggatctaatttc |
100 |
Q |
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| T |
34215572 |
tgcaatgaacagtctatttttaacatttacactaacattcatttttttattaggtgaaattcgtgtgagtctctcatcattttatataggatctaatttc |
34215473 |
T |
|
| Q |
101 |
aaagtgtgatactcacatggatttcacgcaataaaagagtgagtatcatagtgttaaaaatagagtgtcgataacactcctcttacatataattaagact |
200 |
Q |
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| T |
34215472 |
aaagtgtgatactcacatggatttcacacaataaaagagtgagtatcagagtgttggaaatagagtgtcgataacactcctcttacatataattaagact |
34215373 |
T |
|
| Q |
201 |
aactaattagttttcgtaagatattgcttgattaacaatggctatattgttagacctttcaccccgatttgaatccaggatctcgcagttgcgtgtacga |
300 |
Q |
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| T |
34215372 |
aactaattagttttcgtaagatattgcttgattaataatgactatattgttagacctttcaccctgatttgaatccgggatctcgcagttgcgtgtacga |
34215273 |
T |
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| Q |
301 |
gatgatacttgtacc |
315 |
Q |
| |
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||||||| ||||||| |
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| T |
34215272 |
gatgatatttgtacc |
34215258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 18237215 - 18237278
Alignment:
| Q |
81 |
tttatgtaggatctaatttcaaagtgtgatactcacatggatttcacgcaataaaagagtgagt |
144 |
Q |
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| T |
18237215 |
tttatgtgggatctattttcaatgtgtgatacccacatgaatttcacccaataaaagagtgagt |
18237278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 3473352 - 3473255
Alignment:
| Q |
49 |
attaggtgaaactcgtgtgagtctttcatcattttatgtaggatctaatttcaaagtgtgatactcacatggatttcacgcaataaaagagtgagtatca |
148 |
Q |
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| T |
3473352 |
attaggtgaaactaatgtgagtct--cactactttatgtgcgatcaattttcaaagtgttgtactcatatggatttcacttaataaaagagtgagtatca |
3473255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 24886139 - 24886076
Alignment:
| Q |
81 |
tttatgtaggatctaatttcaaagtgtgatactcacatggatttcacgcaataaaagagtgagt |
144 |
Q |
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||||||| ||||||| || ||| ||||| ||| |||||| ||||||| |||||||||||||||| |
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| T |
24886139 |
tttatgtgggatctatttacaatgtgtggtacccacatgaatttcacccaataaaagagtgagt |
24886076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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