View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2375_low_26 (Length: 309)

Name: NF2375_low_26
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2375_low_26
NF2375_low_26
[»] chr1 (5 HSPs)
chr1 (84-288)||(40722613-40722819)
chr1 (17-72)||(40722485-40722540)
chr1 (183-277)||(40187947-40188043)
chr1 (197-277)||(40722142-40722224)
chr1 (192-277)||(50483931-50484018)
[»] chr8 (5 HSPs)
chr8 (85-292)||(20066818-20067037)
chr8 (17-72)||(20066689-20066744)
chr8 (198-291)||(20066398-20066493)
chr8 (171-206)||(20066508-20066543)
chr8 (183-235)||(41637340-41637392)
[»] chr2 (1 HSPs)
chr2 (95-292)||(40542560-40542742)
[»] chr4 (3 HSPs)
chr4 (183-277)||(48500889-48500985)
chr4 (171-208)||(17522237-17522274)
chr4 (171-208)||(25421018-25421055)
[»] chr3 (1 HSPs)
chr3 (183-277)||(54353368-54353463)
[»] chr5 (2 HSPs)
chr5 (183-277)||(39349905-39350001)
chr5 (172-208)||(25002230-25002266)
[»] scaffold0081 (1 HSPs)
scaffold0081 (171-208)||(42752-42789)
[»] chr7 (1 HSPs)
chr7 (171-208)||(19218635-19218672)
[»] chr6 (1 HSPs)
chr6 (218-291)||(1756574-1756649)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 84 - 288
Target Start/End: Original strand, 40722613 - 40722819
Alignment:
Q  84 tacgaatggcattgtgcgactgtgatctatttgttatttgttttctttgttcataaaagaattgacgccattgaaggtttnnnnnnngggtgttagtttt 183  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||         |||||||||||||    
T  40722613 tacgaatggcactgtgcgactgtgatctatttgttatttgttttctttgttgataaaagaattgacgccattgaaggtgaaaaaaaagggtgttagtttt 40722712  T
Q  184 gaattgagtttgtggttgaagatgatggatttggtaaatgggtgttaattttgat--tgagttagttgatggtggttgtgttaattttagatttaactgt 281  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||  |||||| ||||| |||| |||||||||||||| ||||||||||    
T  40722713 gaattgagtttctggttgaagatgatggatttgataaatgggtgttaattttgattgtgagttggttgacggtgtttgtgttaattttatatttaactgt 40722812  T
Q  282 ttaatta 288  Q
    |||||||    
T  40722813 ttaatta 40722819  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 40722485 - 40722540
Alignment:
Q  17 aaggaatacaaatgagagattaaagaagaaaagaaatggagaatgaagagggtagt 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40722485 aaggaatacaaatgagagattaaagaagaaaagaaatggagaatgatgagggtagt 40722540  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 40188043 - 40187947
Alignment:
Q  183 tgaattgagtttgtggttgaagatgatggatttggtaaatgggtgttaattttgat--tgagttagttgatggtggttgtgttaattttagatttaa 277  Q
    |||||||  ||||||||||||| ||||| ||||| |||||| ||||||||||||||  |||||||  |||||||||| ||||||||| |||||||||    
T  40188043 tgaattggatttgtggttgaaggtgatgaatttgataaatgagtgttaattttgattgtgagttatatgatggtggtggtgttaattctagatttaa 40187947  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 40722224 - 40722142
Alignment:
Q  197 ggttgaagatgatggatttggtaaatgggtgttaattttgat--tgagttagttgatggtggttgtgttaattttagatttaa 277  Q
    ||||||||  |||||||||| |||||| ||||||||||||||  |||||||| ||| | |||| ||||||||| |||||||||    
T  40722224 ggttgaaggcgatggatttgataaatgagtgttaattttgattgtgagttagatgaagatggtggtgttaattctagatttaa 40722142  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 277
Target Start/End: Complemental strand, 50484018 - 50483931
Alignment:
Q  192 tttgtggttgaagatgatggatttggtaaatgggtgttaattttgat--tgagttagttgatggtggttgtgttaattttagatttaa 277  Q
    ||||||||||||| ||||| ||||| |||||| |||| |||||||||  |||||||  |||||||||| |||  |||| |||||||||    
T  50484018 tttgtggttgaaggtgatgaatttgataaatgagtgtgaattttgattgtgagttatatgatggtggtggtgccaattctagatttaa 50483931  T

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Target: chr8 (Bit Score: 129; Significance: 9e-67; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 85 - 292
Target Start/End: Original strand, 20066818 - 20067037
Alignment:
Q  85 acgaatggcattgtgcgactgtgatctatttgttatttgttttctttgttcataaaagaattgacgccattgaaggtttnnnnnnng----------ggt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||    
T  20066818 acgaatggcattgtgcgactgtgatctatttgttatttgttttctttgttcataaaagaattgacgccattgaaggtaaaaaaaaaaaaaaaaaaaaggt 20066917  T
Q  175 gttagttttgaattgagtttgtggttgaagatgatggatttggtaaatgggtgttaattttgat--tgagttagttgatggtggttgtgttaattttaga 272  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  20066918 gttagttttgaattgagtttgtggttgaagatgatggatttgataaataggtgttaattttgattgtgagttagttgatggtggttgtgttaattttaga 20067017  T
Q  273 tttaactgtttaattatgtc 292  Q
    ||||||| ||||||||||||    
T  20067018 tttaactatttaattatgtc 20067037  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 20066689 - 20066744
Alignment:
Q  17 aaggaatacaaatgagagattaaagaagaaaagaaatggagaatgaagagggtagt 72  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  20066689 aaggaatacaaatgagagattgaagaagaaaagaaatggagaatgaagagagtagt 20066744  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 20066493 - 20066398
Alignment:
Q  198 gttgaagatgatggatttggtaaatgggtgttaattttgat--tgagttagttgatggtggttgtgttaattttagatttaactgtttaattatgt 291  Q
    |||||||  ||| |||||| |||||| ||||||||||||||  |||||||| ||| | |||| ||||||||| |||||||||  |||| |||||||    
T  20066493 gttgaaggcgattgatttgataaatgagtgttaattttgattgtgagttagatgaagatggtggtgttaattctagatttaagagttttattatgt 20066398  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 20066543 - 20066508
Alignment:
Q  171 gggtgttagttttgaattgagtttgtggttgaagat 206  Q
    |||||||||||||||||||||||| |||||||||||    
T  20066543 gggtgttagttttgaattgagtttatggttgaagat 20066508  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 41637392 - 41637340
Alignment:
Q  183 tgaattgagtttgtggttgaagatgatggatttggtaaatgggtgttaatttt 235  Q
    |||||||  ||||||||||||| ||||| ||||| |||||| |||||||||||    
T  41637392 tgaattggatttgtggttgaaggtgatgaatttgataaatgagtgttaatttt 41637340  T

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Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 95 - 292
Target Start/End: Complemental strand, 40542742 - 40542560
Alignment:
Q  95 ttgtgcgactgtgatctatttgttatttgttttctttgttcataaaagaattgacgccattgaaggtttnnnnnnngggtgttagttttgaattgagttt 194  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |        ||||||||||||||||||||||||    
T  40542742 ttgtgcgactgtgatctatttgttgtttgttttctttgttcataaaagaattgacgccattgaagg-tgaaaaaaagggtgttagttttgaattgagttt 40542644  T
Q  195 gtggttgaagatgatggatttggtaaatgggtgttaattttgattgagttagttgatggtggttgtgttaattttagatttaactgtttaattatgtc 292  Q
    |||||||||||||||||||||| |         |||   |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40542643 gtggttgaagatgatggatttgat---------tta---ttg--tgagttagttgatggtggttgtgttaattttagatttaactgtttaattatgtc 40542560  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 48500889 - 48500985
Alignment:
Q  183 tgaattgagtttgtggttgaagatgatggatttggtaaatgggtgttaattttgat--tgagttagttgatggtggttgtgttaattttagatttaa 277  Q
    |||||||  ||||||||||||||||||| ||||| |||||||||||||||||||||  |||| ||  |||||||||| ||||||||| |||||||||    
T  48500889 tgaattggatttgtggttgaagatgatgaatttgataaatgggtgttaattttgattgtgagctatatgatggtggtggtgttaattctagatttaa 48500985  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 17522237 - 17522274
Alignment:
Q  171 gggtgttagttttgaattgagtttgtggttgaagatga 208  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17522237 gggtgttagttttgaattgagtttgtggttgaagatga 17522274  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 25421055 - 25421018
Alignment:
Q  171 gggtgttagttttgaattgagtttgtggttgaagatga 208  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25421055 gggtgttagttttgaattgagtttgtggttgaagatga 25421018  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 54353463 - 54353368
Alignment:
Q  183 tgaattgagtttgtggttgaagatgatggatttggtaaatgggtgttaa-ttttgattgagttagttgatggtggttgtgttaattttagatttaa 277  Q
    |||||||  ||||||||||||| ||||| ||||| |||||| ||||||| ||||||||||||||  |||||||||| ||||||||| |||||||||    
T  54353463 tgaattggatttgtggttgaaggtgatgaatttgataaatgagtgttaaattttgattgagttatatgatggtggtggtgttaattctagatttaa 54353368  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 39350001 - 39349905
Alignment:
Q  183 tgaattgagtttgtggttgaagatgatggatttggtaaatgggtgttaattttgat--tgagttagttgatggtggttgtgttaattttagatttaa 277  Q
    |||||||| ||||||||||||| ||||| ||||| |||||| ||||||||||||||  |||||||  ||||||||||  |||||||| |||||||||    
T  39350001 tgaattgaatttgtggttgaaggtgatgaatttgataaatgagtgttaattttgattgtgagttatatgatggtggtgatgttaattctagatttaa 39349905  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 25002266 - 25002230
Alignment:
Q  172 ggtgttagttttgaattgagtttgtggttgaagatga 208  Q
    ||||||||||||| |||||||||||||||||||||||    
T  25002266 ggtgttagttttgcattgagtttgtggttgaagatga 25002230  T

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Target: scaffold0081 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 42752 - 42789
Alignment:
Q  171 gggtgttagttttgaattgagtttgtggttgaagatga 208  Q
    |||||||| |||||||||||||||||||||||||||||    
T  42752 gggtgttacttttgaattgagtttgtggttgaagatga 42789  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 19218635 - 19218672
Alignment:
Q  171 gggtgttagttttgaattgagtttgtggttgaagatga 208  Q
    |||||||||||||||||||||||||||| |||||||||    
T  19218635 gggtgttagttttgaattgagtttgtggatgaagatga 19218672  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 1756649 - 1756574
Alignment:
Q  218 taaatgggtgttaattttgattg--agttagttgatggtggttgtgttaattttagatttaactgtttaattatgt 291  Q
    ||||||||||||| |||||||||  |||||| ||||||||||  |||| ||| || ||||||  ||||||||||||    
T  1756649 taaatgggtgttagttttgattgtgagttagatgatggtggtgatgttgattctaaatttaagggtttaattatgt 1756574  T

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