View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2375_low_31 (Length: 270)
Name: NF2375_low_31
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2375_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 1072506 - 1072246
Alignment:
| Q |
1 |
ttcgaatatatagatattgttggaatgttaaaatctgtcttaagtctataagatcaccaaaccatatggaacaaccactaccatcactcacatttaagtt |
100 |
Q |
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| T |
1072506 |
ttcgaatatatagatattgttggaatgttaaaatctgtcttaagtctataagatcaccaaaccatatggaacatccactaccatcactcacatttaagtt |
1072407 |
T |
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| Q |
101 |
tgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtgttgtatctggcaatttc |
200 |
Q |
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| T |
1072406 |
tgaataagccatacaagaacaatcttccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtgttgtatctggcaatttc |
1072307 |
T |
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| Q |
201 |
aatccagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgcctttgc |
261 |
Q |
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| T |
1072306 |
aatccagaaaatgttctaaaacgatcattcacaccacaattccatgtttcttcacctttgc |
1072246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 1047696 - 1047433
Alignment:
| Q |
1 |
ttcgaatatatagatattgttggaatgttaaaatctgtcttaagtctataagatcaccaaaccatatggaacaaccactaccatcact---cacatttaa |
97 |
Q |
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| T |
1047696 |
ttcgaatatatagatattgttggaatgttaagatctgtttcaagtcaataagatcaccaaaccatatagaacaaccactgccatctccagccacatccaa |
1047597 |
T |
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| Q |
98 |
gtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtgttgtatctggcaat |
197 |
Q |
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| T |
1047596 |
gtttgaataagccatgcaagaacaattttccaagcatttatttttacaattctcaagtgtcatattagcatcaacccaagtatgtgttgtatctggcaat |
1047497 |
T |
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| Q |
198 |
ttcaatccagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgcctttgc |
261 |
Q |
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| T |
1047496 |
ttcaatccagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgcctttgc |
1047433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1088170 - 1087930
Alignment:
| Q |
1 |
ttcgaatatatagatattgttggaatgttaaaatctgtcttaagtctataagatcaccaaaccatatggaacaaccactaccatcact---cacatttaa |
97 |
Q |
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| T |
1088170 |
ttcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaaccactaccatctccagccacatccaa |
1088071 |
T |
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| Q |
98 |
gtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtgttgtatctggcaat |
197 |
Q |
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| T |
1088070 |
gtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgtcatatttgcatcaacccaagtatgtgatgtatctggcaat |
1087971 |
T |
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| Q |
198 |
ttcaatccagaaaatgttccaaaaccatcattcacaccaca |
238 |
Q |
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| T |
1087970 |
ttcaatccataaaatcttacaaaactatcattcactccaca |
1087930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 48 - 259
Target Start/End: Complemental strand, 1104676 - 1104462
Alignment:
| Q |
48 |
ataagatcaccaaaccatatggaacaaccactaccatcactc---acatttaagtttgaataagccatgcaagaacaatcttccaagcatttattcttac |
144 |
Q |
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| T |
1104676 |
ataagatcaccaaaccatatagaacaaccactaccatctcccctaacatctaagtttgaataagccatgcaagaacaattttccaagcatttgttcttac |
1104577 |
T |
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| Q |
145 |
aattctcaagtgtcatattagcatcaacccaagtatgtgttgtatctggcaatttcaatccagaaaatgttccaaaaccatcattcacaccacaattcca |
244 |
Q |
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| T |
1104576 |
aattctcaagtgtcatattaccatcaacccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccacaattcca |
1104477 |
T |
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| Q |
245 |
tgtttcttcgccttt |
259 |
Q |
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| T |
1104476 |
tgtttcttcgccttt |
1104462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 28427155 - 28427114
Alignment:
| Q |
38 |
tcttaagtctataagatcaccaaaccatatggaacaaccact |
79 |
Q |
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| T |
28427155 |
tcttaaatcaataagatcaccaaaccagatggaacaaccact |
28427114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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