View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2375_low_39 (Length: 229)

Name: NF2375_low_39
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2375_low_39
NF2375_low_39
[»] chr1 (7 HSPs)
chr1 (2-213)||(6320450-6320662)
chr1 (53-102)||(3377505-3377554)
chr1 (57-102)||(14978801-14978846)
chr1 (53-102)||(3377772-3377821)
chr1 (53-102)||(17760686-17760735)
chr1 (53-102)||(51250489-51250538)
chr1 (52-100)||(25085650-25085698)
[»] chr4 (15 HSPs)
chr4 (53-102)||(35615318-35615367)
chr4 (43-102)||(51362540-51362599)
chr4 (55-102)||(1420539-1420586)
chr4 (55-102)||(21957730-21957777)
chr4 (54-100)||(2016797-2016843)
chr4 (53-102)||(20112410-20112459)
chr4 (55-102)||(2017051-2017098)
chr4 (55-102)||(14449548-14449595)
chr4 (43-102)||(20118157-20118216)
chr4 (52-102)||(6207436-6207486)
chr4 (58-115)||(37832963-37833021)
chr4 (8-102)||(53312290-53312380)
chr4 (53-102)||(4796299-4796348)
chr4 (53-102)||(25909491-25909540)
chr4 (46-102)||(23759565-23759621)
[»] chr2 (8 HSPs)
chr2 (53-102)||(43028798-43028847)
chr2 (46-102)||(14489218-14489274)
chr2 (53-100)||(5470596-5470643)
chr2 (55-102)||(34679101-34679148)
chr2 (44-102)||(6592728-6592786)
chr2 (51-102)||(4576800-4576850)
chr2 (56-102)||(15022842-15022888)
chr2 (57-102)||(36715559-36715604)
[»] chr7 (11 HSPs)
chr7 (46-98)||(4049714-4049766)
chr7 (57-112)||(15106986-15107041)
chr7 (46-102)||(35250123-35250179)
chr7 (57-102)||(6792061-6792106)
chr7 (53-109)||(18186713-18186769)
chr7 (52-102)||(15347958-15348008)
chr7 (53-102)||(21505878-21505927)
chr7 (53-102)||(28472394-28472442)
chr7 (53-102)||(41243648-41243697)
chr7 (53-102)||(47909698-47909747)
chr7 (54-102)||(17931988-17932036)
[»] chr5 (13 HSPs)
chr5 (56-102)||(22300605-22300651)
chr5 (53-102)||(19131759-19131808)
chr5 (53-102)||(27904744-27904793)
chr5 (43-102)||(3333952-3334011)
chr5 (53-102)||(12406045-12406094)
chr5 (53-102)||(37897978-37898027)
chr5 (58-102)||(31080481-31080525)
chr5 (52-102)||(6131795-6131845)
chr5 (52-102)||(40133139-40133189)
chr5 (53-102)||(19340768-19340817)
chr5 (46-102)||(20629998-20630055)
chr5 (52-115)||(12406300-12406364)
chr5 (58-102)||(40132908-40132952)
[»] chr8 (7 HSPs)
chr8 (54-102)||(41487471-41487519)
chr8 (52-102)||(29044805-29044855)
chr8 (52-102)||(32071272-32071321)
chr8 (53-102)||(25896994-25897043)
chr8 (60-102)||(27545348-27545390)
chr8 (53-102)||(23702395-23702444)
chr8 (53-102)||(28349568-28349617)
[»] chr6 (5 HSPs)
chr6 (55-102)||(6036922-6036968)
chr6 (53-102)||(10727455-10727504)
chr6 (58-102)||(30349353-30349397)
chr6 (54-102)||(33399790-33399837)
chr6 (58-102)||(17248640-17248684)
[»] scaffold0515 (1 HSPs)
scaffold0515 (53-102)||(3643-3692)
[»] scaffold0306 (1 HSPs)
scaffold0306 (53-102)||(3643-3692)
[»] scaffold0194 (1 HSPs)
scaffold0194 (53-102)||(25155-25204)
[»] chr3 (7 HSPs)
chr3 (53-102)||(44586047-44586096)
chr3 (53-102)||(51315745-51315794)
chr3 (52-102)||(578671-578721)
chr3 (53-102)||(45125099-45125148)
chr3 (54-102)||(15978952-15979000)
chr3 (54-102)||(38957849-38957897)
chr3 (58-102)||(54464166-54464210)
[»] scaffold0248 (1 HSPs)
scaffold0248 (53-102)||(406-455)
[»] scaffold0025 (1 HSPs)
scaffold0025 (53-102)||(19602-19651)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 6320662 - 6320450
Alignment:
Q  2 cacagatgcaaaatttagggggtggttttgtannnnnnnncttcttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatt 101  Q
    |||||||||||||||||||||  |||||||||        |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  6320662 cacagatgcaaaatttaggggacggttttgtattttttttcttcttcttaaggggccaaaatcgcaactttagaaaagttagagggctaaaactgcaatt 6320563  T
Q  102 agacttaatattatcatcacagaaatataattaaactactattcaatttcatattcttattctgtat-ctatcatactactaatcaatttgtaattatat 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  6320562 agccttaatattatcatcacagaaatataattaaactactattcaatttcatattcttattctgtatcctctcatactactaatcaatttgtaattatat 6320463  T
Q  201 gatggcaccaaaa 213  Q
    |||||||||||||    
T  6320462 gatggcaccaaaa 6320450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 3377554 - 3377505
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||||||    
T  3377554 ggggccaaaatcgcaactttggaaaagttagggggctaaaactgctatta 3377505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 14978846 - 14978801
Alignment:
Q  57 ccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||| || ||||||| ||||||||||||||||||    
T  14978846 ccaaaatcgcaactttggaaaagttagggggctaaaactgctatta 14978801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 3377772 - 3377821
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||| ||||||| |  ||||||| ||||||||||||||||||    
T  3377772 ggggccaaaatcacaactttgggaaagttagggggctaaaactgctatta 3377821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 17760735 - 17760686
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||||   |||||||| |||||||| |||||||||    
T  17760735 ggggccaaaatcgcaactttgaggaagttagggggctaaagctgctatta 17760686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 51250538 - 51250489
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||||  | ||||||| |||||||||||| |||||    
T  51250538 ggggccaaaatcgcaactttgaaaaagttagggggctaaaactgttatta 51250489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 25085650 - 25085698
Alignment:
Q  52 aggggccaaaatcgcaactttagagaagttagagggctaaaactgctat 100  Q
    ||||||||||||| ||||||| || ||||||| ||||||||| ||||||    
T  25085650 aggggccaaaatcacaactttggaaaagttagggggctaaaattgctat 25085698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 35615367 - 35615318
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  35615367 ggggccaaaatcgcaactttagaaaagttagggggctaaaactgctatta 35615318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 51362599 - 51362540
Alignment:
Q  43 ttcttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||| | ||||||||||||||||||||||| ||||||| ||||||||||| ||||||    
T  51362599 ttcttcttagggggccaaaatcgcaactttagaaaagttagggggctaaaactactatta 51362540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 1420586 - 1420539
Alignment:
Q  55 ggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||    
T  1420586 ggccaaaatcgcaactttggaaaagttagggggctaaaactgctatta 1420539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 21957730 - 21957777
Alignment:
Q  55 ggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||    
T  21957730 ggccaaaatcgcaactttggaaaagttagggggctaaaactgctatta 21957777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 2016843 - 2016797
Alignment:
Q  54 gggccaaaatcgcaactttagagaagttagagggctaaaactgctat 100  Q
    ||||||||||||||||||| || ||||||| ||||||||||||||||    
T  2016843 gggccaaaatcgcaactttggaaaagttagggggctaaaactgctat 2016797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 20112410 - 20112459
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||||| || |||||||| ||||||||||| |||||    
T  20112410 ggggccaaaatcgcaactttggaaaagttagaaggctaaaactgttatta 20112459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 2017051 - 2017098
Alignment:
Q  55 ggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||||  ||||||  ||||||||||||||||||    
T  2017051 ggccaaaatcgcaactttaggaaagttatggggctaaaactgctatta 2017098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 14449548 - 14449595
Alignment:
Q  55 ggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||| || ||||||| ||||||||||| ||||||    
T  14449548 ggccaaaatcgcaactttggaaaagttagggggctaaaactactatta 14449595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 20118157 - 20118216
Alignment:
Q  43 ttcttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||| |||||||||||||| |||||||| | ||||||  ||||||||| ||||||||    
T  20118157 ttcttcttaaggggccaaaatcacaactttataaaagttaaggggctaaaattgctatta 20118216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 6207436 - 6207486
Alignment:
Q  52 aggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||| |||||||||  || |||| ||||||||||||||||||    
T  6207436 aggggccaaaatcacaactttaggaaaattagggggctaaaactgctatta 6207486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 37832963 - 37833021
Alignment:
Q  58 caaaatcgcaactttagagaagttagagggctaaaactgctatt-agacttaatattat 115  Q
    |||||||||||||||||  |||||||  |||||||||||||||| || |||||||||||    
T  37832963 caaaatcgcaactttaggaaagttaggaggctaaaactgctattaagccttaatattat 37833021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 53312380 - 53312290
Alignment:
Q  8 tgcaaaatttagggggtggttttgtannnnnnnncttcttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||||||||||         || |||| | ||||||||||||||||||||  | ||||||| ||||||||| ||||||||    
T  53312380 tgcaaaatttagggggtggttttgtagtttg----tttttcttagggggccaaaatcgcaactttgaaaaagttagggggctaaaaatgctatta 53312290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 4796299 - 4796348
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||| |||| ||| || ||||||| ||||||||||||||||||    
T  4796299 ggggccaaaattgcaattttggataagttagggggctaaaactgctatta 4796348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 25909540 - 25909491
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||| ||||||| || ||||||| ||| ||||||||||||||    
T  25909540 ggggccaaaatcacaactttggaaaagttagggggttaaaactgctatta 25909491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 23759621 - 23759565
Alignment:
Q  46 ttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||| |||||||||||||||||||||||   ||||||| |||| |||||| ||||||    
T  23759621 ttcttaaggggccaaaatcgcaactttatgaaagttagggggcgaaaactactatta 23759565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 43028847 - 43028798
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  43028847 ggggccaaaatcgcaactttggagaagttagggggctaaaactgctatta 43028798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 14489274 - 14489218
Alignment:
Q  46 ttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||| |||||||||||||| ||||||| |  ||||||||||||||||||||||||||    
T  14489274 ttcttaaggggccaaaatcacaacttttggaaagttagagggctaaaactgctatta 14489218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 5470596 - 5470643
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctat 100  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  5470596 ggggccaaaatcgcaactttaggaaagttagggggctaaaactgctat 5470643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 34679148 - 34679101
Alignment:
Q  55 ggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||    
T  34679148 ggccaaaatcgcaactttggaaaagttagggggctaaaactgctatta 34679101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 6592786 - 6592728
Alignment:
Q  44 tcttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||| | |||| ||||||||||||||| || ||||||| ||||||||||||||||||    
T  6592786 tcttcttagggggtcaaaatcgcaactttggaaaagttagggggctaaaactgctatta 6592728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 4576800 - 4576850
Alignment:
Q  51 aaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||||||| || ||||||| || |||||||||||||||    
T  4576800 aaggggccaaaatcgcaactttgga-aagttaggggtctaaaactgctatta 4576850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 15022888 - 15022842
Alignment:
Q  56 gccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||| ||||||| || ||||||| ||||||||||||||||||    
T  15022888 gccaaaatcacaactttcgaaaagttagggggctaaaactgctatta 15022842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 36715559 - 36715604
Alignment:
Q  57 ccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||| | ||||||| | ||||||||||||||||    
T  36715559 ccaaaatcgcaactttaaaaaagttagggagctaaaactgctatta 36715604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 4049766 - 4049714
Alignment:
Q  46 ttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgct 98  Q
    |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  4049766 ttcttaaggggccaaaatcgcaactttagaaaagttagtgggctaaaactgct 4049714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 15107041 - 15106986
Alignment:
Q  57 ccaaaatcgcaactttagagaagttagagggctaaaactgctattagacttaatat 112  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| || ||||||    
T  15107041 ccaaaatcacaactttagacaagttagagggctaaaactgctattaaacctaatat 15106986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 35250179 - 35250123
Alignment:
Q  46 ttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||| ||||| |||||||||||||||| || ||||||||||||||||||| ||||||    
T  35250179 ttcttaagggaccaaaatcgcaactttggaaaagttagagggctaaaactactatta 35250123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 6792061 - 6792106
Alignment:
Q  57 ccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||| || ||||||| ||||||||||||||||||    
T  6792061 ccaaaatcgcaactttggaaaagttagggggctaaaactgctatta 6792106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 18186713 - 18186769
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctattagacttaa 109  Q
    |||| |||||||| |||||| || ||||||| |||||||||||||||||| ||||||    
T  18186713 ggggtcaaaatcgtaactttggaaaagttagggggctaaaactgctattaaacttaa 18186769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 15348008 - 15347958
Alignment:
Q  52 aggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||| |||||||||||||||||  ||||||| |||||||||| |||||||    
T  15348008 aggggtcaaaatcgcaactttaggaaagttagggggctaaaacggctatta 15347958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 21505878 - 21505927
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||||  | ||||||| || |||||||||||||||    
T  21505878 ggggccaaaatcgcaactttgaaaaagttaggggactaaaactgctatta 21505927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 28472442 - 28472394
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||| ||||||||||||||| || ||||||| ||||||||||||||||||    
T  28472442 ggggtcaaaatcgcaactttggaaaagttag-gggctaaaactgctatta 28472394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 41243697 - 41243648
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||| ||||| |||||||| || ||||||| ||||||||||||||||||    
T  41243697 ggggctaaaattgcaactttggaaaagttagggggctaaaactgctatta 41243648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 47909747 - 47909698
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||| |||||||||||||| |  ||||||| ||||||||||||||||||    
T  47909747 ggggctaaaatcgcaactttgggaaagttagggggctaaaactgctatta 47909698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 17931988 - 17932036
Alignment:
Q  54 gggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||| || |||| ||  |||||||||||||||||    
T  17931988 gggccaaaatcgcaactttggaaaagtgaggaggctaaaactgctatta 17932036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 22300651 - 22300605
Alignment:
Q  56 gccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||    
T  22300651 gccaaaatcgcaactttagaaaagttagagggctaaaactactatta 22300605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 19131759 - 19131808
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||| ||||||||||||||||| |||||||||| |||||||||||||||    
T  19131759 ggggcaaaaatcgcaactttagaaaagttagaggactaaaactgctatta 19131808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 27904744 - 27904793
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  27904744 ggggccaaaatcgcaactttgaaaaagttagagggctaaaactgctatta 27904793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 3333952 - 3334011
Alignment:
Q  43 ttcttctcaaggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||| | |||||||||||||||||||| || ||||||| ||||||||||| ||||||    
T  3333952 ttcttcttagggggccaaaatcgcaactttggaaaagttagggggctaaaactactatta 3334011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 12406094 - 12406045
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||||| |  ||||||| ||||||||||||||||||    
T  12406094 ggggccaaaatcgcaactttgggaaagttagggggctaaaactgctatta 12406045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 37897978 - 37898027
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||||  | ||||||| ||||||||||||||||||    
T  37897978 ggggccaaaatcgcaactttgaaaaagttagggggctaaaactgctatta 37898027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 31080525 - 31080481
Alignment:
Q  58 caaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||| || |||||||||||||||||||| |||||    
T  31080525 caaaatcgcaactttggaaaagttagagggctaaaactgatatta 31080481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 6131795 - 6131845
Alignment:
Q  52 aggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||||||||  |||||||   ||||||||||||||||    
T  6131795 aggggccaaaatcgcaactttaggaaagttaggtagctaaaactgctatta 6131845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 40133139 - 40133189
Alignment:
Q  52 aggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||||| |  ||||||| ||||||||| ||||||||    
T  40133139 aggggccaaaatcgcaactttgggaaagttagggggctaaaattgctatta 40133189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 19340817 - 19340768
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||| ||||||||||| ||| || ||||||| ||||||||||||||||||    
T  19340817 ggggtcaaaatcgcaattttggaaaagttagggggctaaaactgctatta 19340768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 20629998 - 20630055
Alignment:
Q  46 ttctcaaggggccaaaatcgcaactttagagaagttagag-ggctaaaactgctatta 102  Q
    |||| |||||||||||||| ||||||| || ||||||| | |||||||||||||||||    
T  20629998 ttcttaaggggccaaaatcacaactttggaaaagttagggaggctaaaactgctatta 20630055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 12406300 - 12406364
Alignment:
Q  52 aggggccaaaatcgcaactttagagaagttagagggctaaaactgctatt-agacttaatattat 115  Q
    ||||||||||||| |||||||  | ||||||| ||||||||| ||||||| || |||||||||||    
T  12406300 aggggccaaaatctcaactttgaaaaagttagggggctaaaattgctattaagccttaatattat 12406364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 40132952 - 40132908
Alignment:
Q  58 caaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||  | |||||||||| |||||||||||||||    
T  40132952 caaaatcgcaactttgaaaaagttagaggactaaaactgctatta 40132908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 41487471 - 41487519
Alignment:
Q  54 gggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||||    
T  41487471 gggctaaaatcgcaactttggaaaagttagagggctaaaactgctatta 41487519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 29044805 - 29044855
Alignment:
Q  52 aggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||| ||||||||| |||||||| |||||||| ||||||||||||||||||    
T  29044805 agggaccaaaatcgtaactttagggaagttagggggctaaaactgctatta 29044855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 32071272 - 32071321
Alignment:
Q  52 aggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||||||||||    
T  32071272 aggggtcaaaatcgcaactttagaaaagttag-gggctaaaactgctatta 32071321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 25897043 - 25896994
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||||  | ||||||| ||||||||||||||||||    
T  25897043 ggggccaaaatcgcaactttgaaaaagttagggggctaaaactgctatta 25896994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 27545390 - 27545348
Alignment:
Q  60 aaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||| || |||||||| |||||||||||||||||    
T  27545390 aaatcgcaactttggaaaagttagacggctaaaactgctatta 27545348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 23702395 - 23702444
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||| |||||||||||||| |  ||||||| ||||||||||||||||||    
T  23702395 ggggctaaaatcgcaacttttggaaagttagggggctaaaactgctatta 23702444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 28349568 - 28349617
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||||| |  ||||||| ||||||||||| ||||||    
T  28349568 ggggccaaaatcgcaactttgggaaagttagggggctaaaactactatta 28349617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 6036922 - 6036968
Alignment:
Q  55 ggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  6036922 ggccaaaatcgcaactttagaaaagttag-gggctaaaactgctatta 6036968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 10727455 - 10727504
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||| ||||||| || ||||||| ||||||||||||||||||    
T  10727455 ggggccaaaatcacaactttggaaaagttagggggctaaaactgctatta 10727504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 30349397 - 30349353
Alignment:
Q  58 caaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||    
T  30349397 caaaatcgcaactttgggaaagttagagggctaaaactgctatta 30349353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 33399837 - 33399790
Alignment:
Q  54 gggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||| || ||||||| ||||||||||||||||||    
T  33399837 gggccaaaatcgcaactttggaaaagttag-gggctaaaactgctatta 33399790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 17248684 - 17248640
Alignment:
Q  58 caaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||| | |||||||  |||||||||||||||||    
T  17248684 caaaatcgcaactttaaaaaagttaggaggctaaaactgctatta 17248640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 3692 - 3643
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||||| |  ||||||| ||||||||||||||||||    
T  3692 ggggccaaaatcgcaactttgggaaagttagggggctaaaactgctatta 3643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 3692 - 3643
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||||| |  ||||||| ||||||||||||||||||    
T  3692 ggggccaaaatcgcaactttgggaaagttagggggctaaaactgctatta 3643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 25155 - 25204
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||| |||||| |||||||||| |||||||| |||||||||||||||||    
T  25155 ggggctaaaatcacaactttagaaaagttagaaggctaaaactgctatta 25204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 44586047 - 44586096
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||||| |  ||||||| ||||||||||||||||||    
T  44586047 ggggccaaaatcgcaactttgggaaagttagggggctaaaactgctatta 44586096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 51315745 - 51315794
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||||| |  ||||||| ||||||||||||||||||    
T  51315745 ggggccaaaatcgcaactttgggaaagttagggggctaaaactgctatta 51315794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 578671 - 578721
Alignment:
Q  52 aggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||||| || |||||||  ||||||||||| |||||    
T  578671 aggggccaaaatcgcaactttggaaaagttaggaggctaaaactgatatta 578721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 45125148 - 45125099
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||||| || ||| ||||||||||||| ||| ||||    
T  45125148 ggggccaaaatcgcaacttttgaaaagatagagggctaaaagtgcaatta 45125099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 15978952 - 15979000
Alignment:
Q  54 gggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||| |||||| ||||||  ||||||||||| ||||||    
T  15978952 gggccaaaatcgcaattttagaaaagttacggggctaaaactactatta 15979000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 38957897 - 38957849
Alignment:
Q  54 gggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||||||||||||||| | || ||||  |||||||||||||||||    
T  38957897 gggccaaaatcgcaactttaaaaaaattaggaggctaaaactgctatta 38957849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 54464210 - 54464166
Alignment:
Q  58 caaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    |||||||| ||||||||| ||||||| || |||||||||||||||    
T  54464210 caaaatcgtaactttagaaaagttaggggactaaaactgctatta 54464166  T

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Target: scaffold0248 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 455 - 406
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||||   |||||||| |||||||| |||||||||    
T  455 ggggccaaaatcgcaactttgaggaagttagggggctaaagctgctatta 406  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 19602 - 19651
Alignment:
Q  53 ggggccaaaatcgcaactttagagaagttagagggctaaaactgctatta 102  Q
    ||||||||||||||||||||  | ||||||| || |||||||||||||||    
T  19602 ggggccaaaatcgcaactttgaaaaagttaggggactaaaactgctatta 19651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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