View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2375_low_5 (Length: 540)
Name: NF2375_low_5
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2375_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 131939 - 131709
Alignment:
| Q |
4 |
gggaattgatgagcaattttgtaataaataaatatattgacttttaattcatgatgaagtgatctatataaatcaaatgcatacataaagaagttgtttc |
103 |
Q |
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| T |
131939 |
gggaattgatgagcaattttgtaataaataaatatattgacttttaattcatgatgaagtgatctatataaatcaaatgcatacataaagaagttgtttc |
131840 |
T |
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| Q |
104 |
ctatgatttttggct--gtgtttgttgtggtttcggctgttcggtcattaggtccaacgaagtttaactcttgtaataatctccatctaaatacataaat |
201 |
Q |
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| T |
131839 |
ctatgatttttggctctgtgtttgttgtggtttcggctgttcggtcattaggtccaacgaagtttaactcttgtaataatctccatctaaatacataaat |
131740 |
T |
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| Q |
202 |
tgttgacgtttttcctaacttagtaataccc |
232 |
Q |
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| T |
131739 |
tgttgacgtttttcctaacttagtaataccc |
131709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 256 - 426
Target Start/End: Original strand, 16577741 - 16577907
Alignment:
| Q |
256 |
aagagaacacttcctaataatcgtgtgatcaaccatcactactagctagtagtccttttgcatcttatgatgaaaccatctcttttacttaattaataaa |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16577741 |
aagagaacacttcctaataatcgtgtgatcaaccatcactactagctagtagtccttttgcatcttatgatgaaaccatctcttttacttaattaataaa |
16577840 |
T |
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| Q |
356 |
taattaatcattctcactttcatatcatacacacaaacactcctttacttgattccccccgagtcattgaa |
426 |
Q |
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| T |
16577841 |
taattaa----tctcactttcatatcatacacacaaacactcctttacttgattccccccgagtcattgaa |
16577907 |
T |
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