View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2375_low_7 (Length: 483)
Name: NF2375_low_7
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2375_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Complemental strand, 29063067 - 29062619
Alignment:
| Q |
19 |
catttgaagacgacgagggaggtgaagagggaggagttttcctttgtagaagagatcatcagcaggggtagttttggaannnnnnncatttgagatagaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29063067 |
catttgaagacgacgagggaggtgaagagggaggagttttcctttgtagaagagatcatcagcaggggtagttttggaatttttttcatttgagatagaa |
29062968 |
T |
|
| Q |
119 |
ctactcatttggaattcaaactctctggtattctttggtggagaaccaaaagaataagagaagaagtgtgagggagaacatagttccatgtcaatgtagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29062967 |
ctactcatttggaattcaaactctctggtattctttggtggagaaccaaaagaataagagaagaagtgtgagggagaacatagttccatgtcaatgtagt |
29062868 |
T |
|
| Q |
219 |
cttcatctacatgaaccaaagtgacttgtttagtggccatttcaattttcatttgtgatgatggtttttctctatttgtgtttgttggacttagaaatgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29062867 |
cttcatctacatgaaccaaagtgacttgtttagtggccatttcaattttcatttgtgatgatggtttttctctatttgtgtttgttggacttagaaatgt |
29062768 |
T |
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| Q |
319 |
ggagatgcctattggaaattgagcttcctcaaggaaagagagaagagaagggaattatttgaattgaatgatggatgtttgccaaacattgtatttatag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29062767 |
ggagatgcctattggaaattgagcttcctcaaggaaagagagaagagaagggaattatttgaattgaatgatggatgtttgccaaacattgtatttatag |
29062668 |
T |
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| Q |
419 |
agtttgagtaaataattattttactcattgaatatgggaaacaatatcc |
467 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29062667 |
agcttgagtaaataattattttactctttgaatatgggaaacaatatcc |
29062619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 52287741 - 52287784
Alignment:
| Q |
38 |
aggtgaagagggaggagttttcctttgtagaagagatcatcagc |
81 |
Q |
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|||||||| ||||||||||||||||||||||| || |||||||| |
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| T |
52287741 |
aggtgaagggggaggagttttcctttgtagaaaagctcatcagc |
52287784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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