View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2375_low_8 (Length: 462)
Name: NF2375_low_8
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2375_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 26 - 353
Target Start/End: Complemental strand, 39172856 - 39172544
Alignment:
| Q |
26 |
aaatgttgaccccacacgttacatttggcttacatggaatgtttcccatatgcttctttttactttttcattggccagctcatgaataagacacgtgtac |
125 |
Q |
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| T |
39172856 |
aaatgttgaccccacacgttacatttggcttacatggaatgattcccatatgcttcttcttacttttt-------------aggaataagacacgtgtac |
39172770 |
T |
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| Q |
126 |
acgctgtccaatctggtgtaccaccacacatggcaagtttaccgtgagcatgcacagcagccatccacttcagcacattctcattactttcctccaacaa |
225 |
Q |
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| T |
39172769 |
acgctgtccaatctggtgtactaccacacatggcaagtttaccgtgagcatgcacggcagccatccactgcatcgcgttctcattactttcctccaacaa |
39172670 |
T |
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| Q |
226 |
cgtcgtaatctcgttggacaagttatattaaataagtttccgnnnnnnnntaagttcttaataaattgtaatgttgtcaataggtcagtcaaaataagta |
325 |
Q |
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| T |
39172669 |
cgtcgtaatctcgttggacaagt--tctttaataagttttcaaaaaaaaataagttcttaataagttgtaatgttgtcaataggtcactcaaaataagta |
39172572 |
T |
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| Q |
326 |
tatttgaccaaaggaatctaaagcaatt |
353 |
Q |
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| T |
39172571 |
tatttgaccaaaggaatctaaagcaatt |
39172544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 277 - 355
Target Start/End: Complemental strand, 39166043 - 39165966
Alignment:
| Q |
277 |
aagttcttaataaattgtaatgttgtcaataggtcagtcaaaataagtatatttgaccaaaggaatctaaagcaattgc |
355 |
Q |
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| T |
39166043 |
aagttcttaataagttgtaatgttgtcaatag-tcagtcaaaacaagtgtatttgaccaaaggaatctaaagcaattgc |
39165966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 39166545 - 39166398
Alignment:
| Q |
4 |
acttttcatgtgataaaagttcaaatgttgaccccac---acgtta--catttggcttacatggaatgtttcccatatgcttctttttactttttcattg |
98 |
Q |
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||||||||||||||||| ||||||||||||||||||| || || |||||||||| || |||||| ||| | |||||||||| ||| |||||||||| |
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| T |
39166545 |
acttttcatgtgataaatgttcaaatgttgaccccacgttacatttgtcatttggcttccacggaatgattcacgtatgcttcttcttattttttcattg |
39166446 |
T |
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| Q |
99 |
gccagctcatgaataagacacgtgtacacgctgtccaatctggtgtac |
146 |
Q |
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| T |
39166445 |
gctagctcagggatacgacacgtgtacatgctttccaatctggggtac |
39166398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 39166131 - 39166077
Alignment:
| Q |
192 |
acttcagcacattctcattactttcctccaacaacgtcgtaatctcgttggacaagtt |
249 |
Q |
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| T |
39166131 |
acttcatcacattctcattactttcctc---caacgtcgtaacctcgttgaacaagtt |
39166077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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