View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2375_low_9 (Length: 447)
Name: NF2375_low_9
Description: NF2375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2375_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 50 - 431
Target Start/End: Original strand, 35647003 - 35647400
Alignment:
| Q |
50 |
tacttaatatataatgcaactcattagggaaaagagttttattgtattgttgcaaatgttgactctcaacataatagaaaatacaaaagata-------- |
141 |
Q |
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| T |
35647003 |
tacttaatatacaatgcaactcattagcgaaaagagttttattgcattgttgcaaatgttgactctcaacaaaatagaaaatacaaaagatagaaattaa |
35647102 |
T |
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| Q |
142 |
--------taaattaaatgtgattatcttcatataaataaaaatgtcatcgactgacatatcatttagtcaatttagttctattacacaacattggctaa |
233 |
Q |
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| T |
35647103 |
ttcatagataaattaaatgtgattatcttcatataaataaaaacgccatcaactgacatatcatttagtcaatttagttctattacacaacattggctaa |
35647202 |
T |
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| Q |
234 |
taacgataaaatgatgacataatttataagtcattaaaaaatatgacaacacttaaaatatatggtgatccaaaaaattccttcacgactatagattcat |
333 |
Q |
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| T |
35647203 |
taacgataaaatgatgacataatttataagtcacaaaaaaatatgacaacacttagaatatatggtgatccaaaaaattctttcgcgacgatagattcat |
35647302 |
T |
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| Q |
334 |
agattcaacatcgctttataacttcaatatcagctacaaaagaaatcgaagattcttcaattttacttatatagcatagataatg-gaaatgttaattt |
431 |
Q |
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| T |
35647303 |
agattcaacatcgctttataacttcaatattagctacaaaa-aagttgaagattcttcaattttacttatatagcgtagataatgaaaaatgttaattt |
35647400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 35646956 - 35646985
Alignment:
| Q |
3 |
taatgttgtagatcagtagatgttgactct |
32 |
Q |
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| T |
35646956 |
taatgttgtagatcagtagatgttgactct |
35646985 |
T |
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