View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2376_high_3 (Length: 408)
Name: NF2376_high_3
Description: NF2376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2376_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 28100747 - 28100357
Alignment:
| Q |
14 |
catcagatacgcgatcagaacttatcttatgatctattcaaaatcttatgtgtaagtaattatgctttaatttattgtttttggttttgtttgtgatgtg |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28100747 |
catctgatacgcgatcagaacttatcttatgatctattcaaaatcttatgtgtaagtaattatgctttaatttattgtttttggttttgtttgtgatgtg |
28100648 |
T |
|
| Q |
114 |
tgtagttatgacttatgattcaacttatagttgatttgaaatcgaacactgttgaattcgacattgttgaacctgaggtgcgtactgttgatagtgtgat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28100647 |
tgtagttatgacttatgattcaacttatagttgatttgaaatcgaacactgttgaattcgacattgttgaacctgaggtgcgtactgttgatagtgtgat |
28100548 |
T |
|
| Q |
214 |
attatagactaatgaatagttaactacgcttacttattataaagtgagttatagataaaattgaaagtttgcattatgctttgcagataactgagtatta |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28100547 |
attatagactaatgaatagttaactacgcttatttatgataaagttagttatagataaaattgaaagtttgcattatgctttgcagataactgagtatta |
28100448 |
T |
|
| Q |
314 |
acaacatctagtgggtcatgtctggtaaaacaaatgaatcacatttgagatgaaaatagaagcaacttagaatcaacagttcatctcactc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28100447 |
acaacatctagtgggtcatgtctggtaaaacaaatgaatcacatttgagatgaaaatagaagcaacttagaatcaacagttcatttcactc |
28100357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 33781092 - 33781160
Alignment:
| Q |
126 |
ttatgattcaacttatagttgatttgaaatcgaacactgttgaattcgacattgttgaacctgaggtgc |
194 |
Q |
| |
|
|||||||||||| | | ||||||||||||||||||| || |||| | || ||||||||| ||||||||| |
|
|
| T |
33781092 |
ttatgattcaacctcttgttgatttgaaatcgaacattgatgaacttgatattgttgaaactgaggtgc |
33781160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University