View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2376_high_5 (Length: 350)

Name: NF2376_high_5
Description: NF2376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2376_high_5
NF2376_high_5
[»] chr2 (1 HSPs)
chr2 (23-338)||(19211611-19211924)
[»] chr8 (3 HSPs)
chr8 (23-338)||(18076948-18077261)
chr8 (23-338)||(28940172-28940489)
chr8 (23-338)||(44525888-44526203)
[»] chr1 (2 HSPs)
chr1 (23-338)||(18790633-18790945)
chr1 (23-317)||(52732895-52733192)
[»] chr4 (1 HSPs)
chr4 (23-338)||(54531786-54532099)
[»] chr3 (2 HSPs)
chr3 (23-337)||(34901227-34901542)
chr3 (35-338)||(7590951-7591255)
[»] chr5 (1 HSPs)
chr5 (42-338)||(33683124-33683424)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 23 - 338
Target Start/End: Complemental strand, 19211924 - 19211611
Alignment:
Q  23 aggtctctcatggtggaaggggagaaaaaacctgcaattataggtcatcactagttttaatagttttatattatttttgctatttatacttttgatccac 122  Q
    |||||||||| ||||| ||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19211924 aggtctctcacggtgggaggggagaaaaaacctgcaattgcaggtcaccactagttttaatagttttatattatttttgctatttatacttttgacccac 19211825  T
Q  123 ctaagttaattataaatatttcactcgagnnnnnnnatttacaaaattggcatgtcctcnnnnnnnngttattattatttaaaaaacaaaataagttact 222  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||| |         ||||||||||||||||||| ||||||||||||    
T  19211824 ctaagttaattataaatatttcactcgagtttttttatttacgaaattggcatgtccccctttttt--ttattattatttaaaaaaccaaataagttact 19211727  T
Q  223 accattaattattattttctttcttctttattttctccttgttctgatttccctgcatctctttcgagcaccatcatcacaataatagtgctcatggcac 322  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  19211726 acctttaattattattttctttcttctttattctctccttgttctgatttccctgcatctctttcgagcaccatcatcaaaacaatagtgctcatggcac 19211627  T
Q  323 tggtaaaaactatttt 338  Q
    ||||||||||||||||    
T  19211626 tggtaaaaactatttt 19211611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 338
Target Start/End: Original strand, 18076948 - 18077261
Alignment:
Q  23 aggtctctcatggtggaaggggagaaaaaacctgcaattataggtcatcactagttttaatagttttatattatttttgctatttatacttttgatccac 122  Q
    |||||||||| ||||| |||||||||||||||||||||| || |||| || |||||||||||||||||||||||||||||||||||||||||||| |||     
T  18076948 aggtctctcacggtgggaggggagaaaaaacctgcaattgtatgtcaccattagttttaatagttttatattatttttgctatttatacttttgacccat 18077047  T
Q  123 ctaagttaattataaatatttcactcgagnnnnnnnatttacaaaattggcatgtcctcnnnnnnnngttattattatttaaaaaacaaaataagttact 222  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||| |         || |||||||||||||||| ||||||||||||    
T  18077048 ctaagttaattataaatatttcactcgagtttttttatttacgaaattggcatgtccccctttttt--tttttattatttaaaaaaccaaataagttact 18077145  T
Q  223 accattaattattattttctttcttctttattttctccttgttctgatttccctgcatctctttcgagcaccatcatcacaataatagtgctcatggcac 322  Q
    ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18077146 acctttaattattattttctttcttctttattctctccttgttctgatttccctgcatctctttcgagcaccatcatcacaacaatagtgctcatggcac 18077245  T
Q  323 tggtaaaaactatttt 338  Q
    ||||||||||||||||    
T  18077246 tggtaaaaactatttt 18077261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 23 - 338
Target Start/End: Complemental strand, 28940489 - 28940172
Alignment:
Q  23 aggtctctcatggtggaaggggagaaaaaacctgcaattataggtcatcactagttttaatagttttatattatttttgctatttatacttttgatccac 122  Q
    |||||||||| ||||| ||||||||||||||||||||||  |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28940489 aggtctctcacggtgggaggggagaaaaaacctgcaattgcaggtcaccactagctttaatagttttatattatttttgctatttatacttttgatccac 28940390  T
Q  123 ctaagttaattataaatatttcactcgagnnnnnnnatttacaaaattggcatgtcctcnnnnnnnn--gttattattatttaaaaaacaaaataagtta 220  Q
    |||||||||||||||||||| ||||||||        ||||| |||||||||||||| |          |||||||||||||||||||||||||||||||    
T  28940389 ctaagttaattataaatattccactcgagtttttttgtttacgaaattggcatgtccccccttttttttgttattattatttaaaaaacaaaataagtta 28940290  T
Q  221 ctaccattaattattattttctttcttctttattttctccttgttctgatttccctgcatctctttcgagcaccatcatcacaataatagtgctcatggc 320  Q
    ||||  ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||  ||||| |||||||||| |||||||||||||||    
T  28940289 ctacttttaattattcttttctttcttctttattctctccttgttctgatttccctgcatctcttttcagcactatcatcacaaaaatagtgctcatggc 28940190  T
Q  321 actggtaaaaactatttt 338  Q
    || |||||||||||||||    
T  28940189 acgggtaaaaactatttt 28940172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 23 - 338
Target Start/End: Complemental strand, 44526203 - 44525888
Alignment:
Q  23 aggtctctcatggtggaaggggagaaaaaacctgcaattataggtcatcactagttttaatagttttatattatttttgctatttatacttttgatccac 122  Q
    |||||||| | ||||| ||| ||||||||||||||||||  |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  44526203 aggtctcttacggtgggaggtgagaaaaaacctgcaattgcaggttaccactagttttaatagttttatattatttttgctatttatacttttgacccat 44526104  T
Q  123 ctaagttaattataaatatttcactcgagnnnnnnnatttacaaaattggcatgtcctcnnnnnnnngttattattatttaaaaaacaaaataagttact 222  Q
     ||||||||||||||||||| ||||||||       |||||| |||||| |||||||          |||||||||||||||||||||||||||||||||    
T  44526103 ttaagttaattataaatattccactcgagtttttttatttacgaaattgacatgtccctttttttttgttattattatttaaaaaacaaaataagttact 44526004  T
Q  223 accattaattattattttctttcttctttattttctccttgttctgatttccctgcatctctttcgagcaccatcatcacaataatagtgctcatggcac 322  Q
    ||  || |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||    
T  44526003 acttttgattattcttttctttcttctttattctctccttgttctgatttccctgcatctctttccaacaccatcatcacaacaatagtgctcatggcac 44525904  T
Q  323 tggtaaaaactatttt 338  Q
     |||||||||||||||    
T  44525903 gggtaaaaactatttt 44525888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 338
Target Start/End: Complemental strand, 18790945 - 18790633
Alignment:
Q  23 aggtctctcatggtggaaggggagaaaaaacctgcaattataggtcatcactagttttaatagttttatattatttttgctatttatacttttgatccac 122  Q
    |||||||||| ||||| ||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  18790945 aggtctctcacggtgggaggggagaaaaaacctgcaattgcaggtcaccactagttttaatagttttatattatttttgctatttatacttttgacccat 18790846  T
Q  123 ctaagttaattataaatatttcactcgagnnnnnnnatttacaaaattggcatgtcctcnnnnnnnngttattattatttaaaaaacaaaataagttact 222  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||| |         || |||||||||||||||| ||||||||||||    
T  18790845 ctaagttaattataaatatttcactcgagtttttttatttacgaaattggcatgtcccccctttt---tttttattatttaaaaaaccaaataagttact 18790749  T
Q  223 accattaattattattttctttcttctttattttctccttgttctgatttccctgcatctctttcgagcaccatcatcacaataatagtgctcatggcac 322  Q
    ||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18790748 acctttaattattattttccttcttctttattctctccttgttctgatttccctgcatctctttcgagcaccatcatcacaacaatagtgctcatggcac 18790649  T
Q  323 tggtaaaaactatttt 338  Q
    ||||||||||||||||    
T  18790648 tggtaaaaactatttt 18790633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 52733192 - 52732895
Alignment:
Q  23 aggtctctcatggtggaaggggagaaaaaacctgcaattataggtcatcactagttttaatagttttatattatttttgctatttatacttttgatccac 122  Q
    |||||||||| ||||| ||||||| ||||| ||||||||  |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52733192 aggtctctcacggtgggaggggaggaaaaatctgcaattgcaggtcaccactagttttaatagttttatattatttttgctatttatatttttgatccac 52733093  T
Q  123 ctaagttaattataaatatttcactcgagnnnnnnnatttacaaaattggcatgtcc---tcnnnnnnnngttattattatttaaaaaacaaaataagtt 219  Q
    |||| ||||||||||||||||||||||||       |||||| |||||| |||||||   |         ||||||||||||||||||||||||||||||    
T  52733092 ctaaattaattataaatatttcactcgagtttttttatttacgaaattgacatgtccctcttttttttttgttattattatttaaaaaacaaaataagtt 52732993  T
Q  220 actaccattaattattattttctttcttctttattttctccttgttctgatttccctgcatctctttcgagcaccatcatcacaataatagtgctcat 317  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  52732992 actacctttaattattattttctttcttctttattctctccttgttctgatttccctacatctctttcgagcaccatcatcacaacaatagtgctcat 52732895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 338
Target Start/End: Original strand, 54531786 - 54532099
Alignment:
Q  23 aggtctctcatggtggaaggggagaaaaaacctgcaattataggtcatcactagttttaatagttttatattatttttgctatttatacttttgatccac 122  Q
    |||||||||| ||||| ||||||||||||||||||||||  | |||| || |||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  54531786 aggtctctcacggtgggaggggagaaaaaacctgcaattgcaagtcaccattagttttaatagttttatattatttttgttatttatacttttgacccac 54531885  T
Q  123 ctaagttaattataaatatttcactcgagnnnnnnnatttacaaaattggcatgtcctcnnnnnnnngttattattatttaaaaaacaaaataagttact 222  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||| |         ||||||||||||||||||| ||||||||||||    
T  54531886 ctaagttaattataaatatttcactcgagtttttttatttacgaaattggcatgtccccctttttt--ttattattatttaaaaaaccaaataagttact 54531983  T
Q  223 accattaattattattttctttcttctttattttctccttgttctgatttccctgcatctctttcgagcaccatcatcacaataatagtgctcatggcac 322  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  54531984 acctttaattattattttctttcttctttattctctccttgttctgatttccctgcatctctttcgagcaccatcatcaaaacaatagtgctcatggcac 54532083  T
Q  323 tggtaaaaactatttt 338  Q
    ||||||||||||||||    
T  54532084 tggtaaaaactatttt 54532099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 337
Target Start/End: Original strand, 34901227 - 34901542
Alignment:
Q  23 aggtctctcatggtggaaggggagaaaaaacctgcaattataggtcatcactagttttaatagttttatattatttttgctatttatacttttgatccac 122  Q
    |||||||||| ||||| |||||||||||||||| |||||  |||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34901227 aggtctctcacggtgggaggggagaaaaaacctacaattgcaggtcaccattagttttaatagttttatattatttttgctatttatacttttgacccac 34901326  T
Q  123 ctaagttaattataaatatttcactcgagnnnnnnnatttacaaaattggcatgtcctcnnnnnnnn-gttattattatttaaaaaacaaaataagttac 221  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||| |         ||||||||||||||||||||||||||||||||    
T  34901327 ctaagttaattataaatatttcactcgagtttttttatttacgaaattggcatgtcccctttttttttgttattattatttaaaaaacaaaataagttac 34901426  T
Q  222 taccattaattattattttctttcttctttattttctccttgttctgatttccctgcatctctttcgagcaccatcatcacaataatagtgctcatggca 321  Q
    || | |||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  34901427 tatctttaattattattttctttcttctttattctttccttgttctgatttctctgcatctctttcgagcaccatcatcacaacaatagtgctcatggca 34901526  T
Q  322 ctggtaaaaactattt 337  Q
    ||||||||||||||||    
T  34901527 ctggtaaaaactattt 34901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 35 - 338
Target Start/End: Original strand, 7590951 - 7591255
Alignment:
Q  35 gtggaaggggagaaaaaacctgcaattataggtcatcactagttttaatagttttatattatttttgctatttatacttttgatccacctaagttaatta 134  Q
    |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  7590951 gtgggaggggagaaaaaacctgcaattacaggtcaccactagttttaatagttttatattatttttgctatttatacttttgacccacctaagctaatta 7591050  T
Q  135 taaatatttcactcgagnnnnnnnatttacaaaattggcatgtcctcnnnnnnnn-gttattattatttaaaaaacaaaataagttactaccattaatta 233  Q
    |||||||| ||||||||       |||||| |||||||||||||| |         |||||||||||||||||||||||||||||||||||| |||||||    
T  7591051 taaatattccactcgagtttttttatttacgaaattggcatgtcccctttttttttgttattattatttaaaaaacaaaataagttactacctttaatta 7591150  T
Q  234 ttattttctttcttctttattttctccttgttctgatttccctgcatctctttcgagcaccatcatcacaataatagtgctcatggcactggtaaaaact 333  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| |||||||| ||||||||||    
T  7591151 ttcttttctttcttctttattctctccttgttctgatttccctgcatctcttttcagcaccatcatcacaacaatagtgcccatggcacgggtaaaaact 7591250  T
Q  334 atttt 338  Q
    |||||    
T  7591251 atttt 7591255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 42 - 338
Target Start/End: Original strand, 33683124 - 33683424
Alignment:
Q  42 gggagaaaaaacctgcaattataggtcatcactagttttaatagttttatattatttttgctatttatacttttgatccacctaagttaattataaatat 141  Q
    ||||||||| ||||||||||  |||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33683124 gggagaaaatacctgcaattgcaggtcaccattagttttaatagttttatattatttttgctatttatacttttgacccacctaagttaattataaatat 33683223  T
Q  142 ttcactcgagnnnnnnnatttacaaaattggcatgtcc----tcnnnnnnnngttattattatttaaaaaacaaaataagttactaccattaattattat 237  Q
    | ||||||||       |||||  ||||||||||||||    |         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33683224 tccactcgagtttttttatttatgaaattggcatgtccctttttttttttttgttattattatttaaaaaacaaaataagttactaccattaattattat 33683323  T
Q  238 tttctttcttctttattttctccttgttctgatttccctgcatctctttcgagcaccatcatcacaataatagtgctcatggcactggtaaaaactattt 337  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33683324 tttctttcttctttattctctccttgttctgatttccctgcatctctttcgagcaccatcatcacaacaatagtgctcatggcactggtaaaaactattt 33683423  T
Q  338 t 338  Q
    |    
T  33683424 t 33683424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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