View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2376_low_1 (Length: 480)

Name: NF2376_low_1
Description: NF2376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2376_low_1
NF2376_low_1
[»] chr4 (4 HSPs)
chr4 (16-466)||(25951986-25952436)
chr4 (407-457)||(21592392-21592442)
chr4 (399-455)||(25319007-25319063)
chr4 (416-456)||(44845723-44845763)
[»] chr5 (2 HSPs)
chr5 (399-459)||(29922854-29922914)
chr5 (399-455)||(10898682-10898738)
[»] chr3 (2 HSPs)
chr3 (399-458)||(48089455-48089514)
chr3 (407-455)||(48411018-48411066)
[»] chr1 (2 HSPs)
chr1 (409-449)||(15477824-15477864)
chr1 (411-443)||(45660670-45660702)


Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 16 - 466
Target Start/End: Original strand, 25951986 - 25952436
Alignment:
Q  16 ataaggccttcagagatcaataaatgtcgcaaaccaagcattatgaacacagaaaactgacaaccaaaccaaacctttttgaaaccttgatgagtgggag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25951986 ataaggccttcagagatcaataaatgtcgcaaaccaagcattatgaacacagaaaactgacaaccaaaccaaacctttttgaaaccttgatgagtgggag 25952085  T
Q  116 ttgtgttgtgtaagtgcaggctataagggatgcaccaagaagggccaacattgcaagaaatataggggctgaatacatgtgatcaaaaccaaggaagaaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25952086 ttgtgttgtgtaagtgcaggctataagggatgcaccaagaagggccaacattgaaagaaatataggggctgaatacatgtgatcaaaaccaaggaagaaa 25952185  T
Q  216 atccatctccaagtaaaaaatcctaacacaggatgatcttcagggtaattctggaaataaaactcaggtttctcgccttggtcaataaaagtgcctgcca 315  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25952186 atccatctccaagtaaaaaatcctaacacgggatgatcttcagggtaattctggaaataaaactcaggtttctcgccttggtcaataaaagtgcctgcca 25952285  T
Q  316 tagaaatttttctttagtgcatattggcattcgcttttgggagagctaaaattgatttgacgagttaaaaatgactaagataagtttggtggttctcgag 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25952286 tagaaatttttctttagtgcatattggcattcgcttttgggagagctaaaattgatttgaggagttaaaaatgactaagataagtttggtggttctcgag 25952385  T
Q  416 tataattaatttttgctcaagaattgattctaacttgaagctaacgtttgt 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25952386 tataattaatttttgctcaagaattgattctaacttgaagctaacgtttgt 25952436  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 457
Target Start/End: Original strand, 21592392 - 21592442
Alignment:
Q  407 gttctcgagtataattaatttttgctcaagaattgattctaacttgaagct 457  Q
    |||||||||||||||| |||||| | || || |||||||||||||||||||    
T  21592392 gttctcgagtataattgatttttccgcaggagttgattctaacttgaagct 21592442  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 455
Target Start/End: Original strand, 25319007 - 25319063
Alignment:
Q  399 gtttggtggttctcgagtataattaatttttgctcaagaattgattctaacttgaag 455  Q
    ||||||| | ||||||||| |||| |||||  ||| |||||||||||||||||||||    
T  25319007 gtttggttgctctcgagtagaattgattttgtctccagaattgattctaacttgaag 25319063  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 456
Target Start/End: Original strand, 44845723 - 44845763
Alignment:
Q  416 tataattaatttttgctcaagaattgattctaacttgaagc 456  Q
    ||||||| |||||| ||| ||||||||||||||||||||||    
T  44845723 tataattgatttttcctccagaattgattctaacttgaagc 44845763  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 459
Target Start/End: Original strand, 29922854 - 29922914
Alignment:
Q  399 gtttggtggttctcgagtataattaatttttgctcaagaattgattctaacttgaagctaa 459  Q
    ||||||| ||||||||| | |||| |||||  |||||||||||||| ||||||||||||||    
T  29922854 gtttggttgttctcgagcagaattgattttgtctcaagaattgattttaacttgaagctaa 29922914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 455
Target Start/End: Original strand, 10898682 - 10898738
Alignment:
Q  399 gtttggtggttctcgagtataattaatttttgctcaagaattgattctaacttgaag 455  Q
    ||||||| | ||||||||| |||| |||||  ||| |||||||||||||||||||||    
T  10898682 gtttggttgctctcgagtaaaattgattttgcctctagaattgattctaacttgaag 10898738  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 458
Target Start/End: Complemental strand, 48089514 - 48089455
Alignment:
Q  399 gtttggtggttctcgagtataattaatttttgctcaagaattgattctaacttgaagcta 458  Q
    ||||||| | ||||||||||||||||||||  ||||||||||||||| ||| | ||||||    
T  48089514 gtttggttgctctcgagtataattaattttgcctcaagaattgattcaaaccttaagcta 48089455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 455
Target Start/End: Original strand, 48411018 - 48411066
Alignment:
Q  407 gttctcgagtataattaatttttgctcaagaattgattctaacttgaag 455  Q
    ||||||||||| | ||||||||  ||| |||||||||||||||||||||    
T  48411018 gttctcgagtagatttaattttgcctctagaattgattctaacttgaag 48411066  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 449
Target Start/End: Complemental strand, 15477864 - 15477824
Alignment:
Q  409 tctcgagtataattaatttttgctcaagaattgattctaac 449  Q
    ||||||||||||||||||||| ||| | |||||||||||||    
T  15477864 tctcgagtataattaatttttcctccataattgattctaac 15477824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 443
Target Start/End: Complemental strand, 45660702 - 45660670
Alignment:
Q  411 tcgagtataattaatttttgctcaagaattgat 443  Q
    ||||||||||||||||||| |||||||||||||    
T  45660702 tcgagtataattaatttttcctcaagaattgat 45660670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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