View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2376_low_10 (Length: 236)
Name: NF2376_low_10
Description: NF2376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2376_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4287525 - 4287303
Alignment:
| Q |
1 |
tatctttaacaatgtagaaactaatcttctccaaatatttccggaaaacaatttaatcgttaaacatatagatttgagatttcattttcttagagacctc |
100 |
Q |
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| T |
4287525 |
tatctttaacaatgtagaaactattcttctccaaatatttccggaaaacaattcaatcgttaaacatatagatttgagatttcattttcttagagacctc |
4287426 |
T |
|
| Q |
101 |
gctaaagatggagtgagtgagctagttcatttcaacacaaatgatcaagtatatatcttgcgtcataacacagaacctttaaaaaggatcaccttttagc |
200 |
Q |
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| T |
4287425 |
gctaaagatggagtgagtgagctagttcatttcaacacaaatgatcaagtatatatcttgcgtcataacacagaacctttaaaaaggatcaccttttagc |
4287326 |
T |
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| Q |
201 |
aactgcaagatagattgaaagtg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
4287325 |
aactgcaagatagattgaaagtg |
4287303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 19990314 - 19990230
Alignment:
| Q |
61 |
taaacatatagatttgagatttcattttcttagagacctcgctaaagatggagtgagtgagctagttcatttcaacacaaatgat |
145 |
Q |
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||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||| ||| |||||||||| ||| ||||||||| |
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| T |
19990314 |
taaacatattgatttgagatttcattttcttagtgacctcattaaagatggaatgattgatctagttcattacaaaacaaatgat |
19990230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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