View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2376_low_14 (Length: 219)

Name: NF2376_low_14
Description: NF2376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2376_low_14
NF2376_low_14
[»] chr2 (5 HSPs)
chr2 (14-200)||(16656399-16656586)
chr2 (140-188)||(12244329-12244377)
chr2 (140-188)||(12235926-12235974)
chr2 (140-188)||(14705591-14705639)
chr2 (152-196)||(43626440-43626484)
[»] chr7 (11 HSPs)
chr7 (140-196)||(8668585-8668641)
chr7 (140-196)||(7876760-7876816)
chr7 (140-196)||(8647821-8647877)
chr7 (140-196)||(13332076-13332132)
chr7 (140-196)||(1302431-1302487)
chr7 (140-196)||(6790530-6790586)
chr7 (143-192)||(8630352-8630401)
chr7 (143-196)||(8655469-8655522)
chr7 (152-192)||(8584474-8584514)
chr7 (140-196)||(8660364-8660420)
chr7 (140-180)||(3148507-3148547)
[»] chr5 (2 HSPs)
chr5 (138-196)||(42554111-42554169)
chr5 (141-196)||(28221067-28221122)
[»] chr1 (3 HSPs)
chr1 (138-196)||(4677464-4677522)
chr1 (139-188)||(34465173-34465222)
chr1 (155-196)||(15596179-15596220)
[»] chr4 (3 HSPs)
chr4 (140-196)||(9322990-9323046)
chr4 (140-196)||(9334962-9335018)
chr4 (140-196)||(9377469-9377525)
[»] chr8 (1 HSPs)
chr8 (149-196)||(43745941-43745988)


Alignment Details
Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 16656399 - 16656586
Alignment:
Q  14 caaaggtaaagatgttttatttttcgaaatgacaaatgcattctagttattatttgatctatgctcttattttaagaaatga-nnnnnnnnnnnngtttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             | |||    
T  16656399 caaaggtaaagatgttttatttttcgaaatgacaaatgcattctagttattatttgatctatgctcttattttaagaaatgatttttgtttttttggttt 16656498  T
Q  113 agttgaaagattatggcnnnnnnncatgaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtggatgg 200  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16656499 agttgaaagattatggcaaaaaaacatgaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttgctgtgtggatgg 16656586  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 12244329 - 12244377
Alignment:
Q  140 gaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttg 188  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  12244329 gaaggacgtgccgtgggaatagaccttggtacaacgtattcatgtgttg 12244377  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 12235974 - 12235926
Alignment:
Q  140 gaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttg 188  Q
    ||||||| ||| ||||| ||||||||||| ||||| |||||||||||||    
T  12235974 gaaggacttgctgtggggatagaccttggtacaacatattcatgtgttg 12235926  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 14705639 - 14705591
Alignment:
Q  140 gaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttg 188  Q
    |||||| |||| ||||||||||||||||| ||||| || ||||||||||    
T  14705639 gaaggatgtgctgtgggaatagaccttggtacaacgtactcatgtgttg 14705591  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 43626484 - 43626440
Alignment:
Q  152 gtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    ||||||||||||||||||||||| ||||| ||| ||| |||||||    
T  43626484 gtgggaatagaccttggaacaacgtattcttgtattgctgtgtgg 43626440  T

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Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 8668641 - 8668585
Alignment:
Q  140 gaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  8668641 gaaggacgtgcagtgggaatagatcttggaacaacctattcatgtgttgctgtgtgg 8668585  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 7876760 - 7876816
Alignment:
Q  140 gaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    ||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||||||    
T  7876760 gaaggacgtgcggtgggaatagaccttggaacaacgtattcctgtgttgctgtgtgg 7876816  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 8647877 - 8647821
Alignment:
Q  140 gaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    ||||||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  8647877 gaaggacttgcagtgggaatagaccttggaacaacgtattcgtgtgttgctgtgtgg 8647821  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 13332076 - 13332132
Alignment:
Q  140 gaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    |||||||||||||||||||| |||||||||||||| || |||||||||| |||||||    
T  13332076 gaaggacgtgcagtgggaatcgaccttggaacaacctactcatgtgttgctgtgtgg 13332132  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 1302487 - 1302431
Alignment:
Q  140 gaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    ||||||||||| || ||||||||||||||||| |||||||| ||||||| |||||||    
T  1302487 gaaggacgtgctgttggaatagaccttggaactacttattcgtgtgttgctgtgtgg 1302431  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 6790586 - 6790530
Alignment:
Q  140 gaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    |||||| |||| |||||||||||||| |||||||| ||||| |||||||||||||||    
T  6790586 gaaggatgtgctgtgggaatagacctgggaacaacatattcttgtgttggtgtgtgg 6790530  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 8630401 - 8630352
Alignment:
Q  143 ggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgt 192  Q
    |||| ||| ||||||||||||||||||||||| ||||| |||||||||||    
T  8630401 ggacatgctgtgggaatagaccttggaacaacctattcttgtgttggtgt 8630352  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 8655522 - 8655469
Alignment:
Q  143 ggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    |||||||| || ||||||||||| |||||||| ||||||||||||| |||||||    
T  8655522 ggacgtgctgtcggaatagacctcggaacaacctattcatgtgttgctgtgtgg 8655469  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 8584474 - 8584514
Alignment:
Q  152 gtgggaatagaccttggaacaacttattcatgtgttggtgt 192  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  8584474 gtgggaatagaccttggaacaacctattcttgtgttggtgt 8584514  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 8660420 - 8660364
Alignment:
Q  140 gaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    |||||||||||  | |||||||||||||||||||| ||||| ||||||| |||||||    
T  8660420 gaaggacgtgctattggaatagaccttggaacaacctattcgtgtgttgctgtgtgg 8660364  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 3148547 - 3148507
Alignment:
Q  140 gaaggacgtgcagtgggaatagaccttggaacaacttattc 180  Q
    |||||| ||||||||||||| |||||||||||||| |||||    
T  3148547 gaaggatgtgcagtgggaatcgaccttggaacaacgtattc 3148507  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 42554111 - 42554169
Alignment:
Q  138 atgaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||  |||||||    
T  42554111 atgaaggacgtgcagtgggaatagaccttggaacaacgtattcgtgtgttactgtgtgg 42554169  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 28221122 - 28221067
Alignment:
Q  141 aaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    ||||| |||| ||||||||||| ||||||||||| ||||||||||||| |||||||    
T  28221122 aaggatgtgctgtgggaatagatcttggaacaacgtattcatgtgttgctgtgtgg 28221067  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 4677464 - 4677522
Alignment:
Q  138 atgaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    ||||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||||    
T  4677464 atgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtgg 4677522  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 34465173 - 34465222
Alignment:
Q  139 tgaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttg 188  Q
    |||||||||||| ||||||||||||||||| ||||| || ||||||||||    
T  34465173 tgaaggacgtgctgtgggaatagaccttggcacaacctactcatgtgttg 34465222  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 15596220 - 15596179
Alignment:
Q  155 ggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    |||||||||||||||||||| ||||| ||||||| |||||||    
T  15596220 ggaatagaccttggaacaacgtattcttgtgttgctgtgtgg 15596179  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 9322990 - 9323046
Alignment:
Q  140 gaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    ||||||||||||||||| ||||| ||||||||||| ||||| ||||||| |||||||    
T  9322990 gaaggacgtgcagtgggtatagatcttggaacaacctattcttgtgttgctgtgtgg 9323046  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 9334962 - 9335018
Alignment:
Q  140 gaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    ||||||||||||||||| ||||| ||||||||||| ||||| ||||||| |||||||    
T  9334962 gaaggacgtgcagtgggtatagatcttggaacaacctattcttgtgttgctgtgtgg 9335018  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 9377469 - 9377525
Alignment:
Q  140 gaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    ||||||||||||||||| ||||| ||||||||||| ||||| ||||||| |||||||    
T  9377469 gaaggacgtgcagtgggtatagatcttggaacaacctattcttgtgttgctgtgtgg 9377525  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 43745988 - 43745941
Alignment:
Q  149 gcagtgggaatagaccttggaacaacttattcatgtgttggtgtgtgg 196  Q
    |||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  43745988 gcagtgggaatagaccttggaacaacgtattcgtgtgttgctgtgtgg 43745941  T

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