View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2377_low_3 (Length: 367)
Name: NF2377_low_3
Description: NF2377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2377_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 36282317 - 36281955
Alignment:
| Q |
1 |
agtgattatagcataatataattactaagttacactacttagtaagtgattaaagcataatttaatttcattgctcatgcctttcactacattcaactag |
100 |
Q |
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| T |
36282317 |
agtgattatagcataatataattactaagtgacactacttagtaagtgattaaagcataatttaatttcattgctcatgcctttcactacattcaactag |
36282218 |
T |
|
| Q |
101 |
tgttcttttattcattatcaaaatgtacgatccatttgcatatgattcttcttttatatgaaatgacctcaagacaccaccacttagtctgagtttttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36282217 |
tgttcttttattcattatcaaaatgtacgatccatttgcatatgattcttcttttatatgaaatgacctcaagacaccaccacttagtctgagtttttgt |
36282118 |
T |
|
| Q |
201 |
tgtggttgtcaatttgtgagtggaatacctttatactccaaactcttccttaaattatccttataatcagcaacattaccatgaatatgtttagttaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36282117 |
tgtggttgtcaatttgtgagtggaatacctttatactccaaactcttccttaaattatccttataatcagcaacattaccatgaatatgtttagttaagg |
36282018 |
T |
|
| Q |
301 |
aaggttttaaccatttataccgttattgaaaatattcagaacttatattcaacaattgatgatg |
364 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36282017 |
aaggttttaacca-ttataccgttattgaaaatattcagaacttatattcaacaattgatgatg |
36281955 |
T |
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