View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2377_low_5 (Length: 305)
Name: NF2377_low_5
Description: NF2377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2377_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 38984930 - 38984690
Alignment:
| Q |
19 |
agtatctcttgggagtaataactccacgatttcaccactcggttctccttgatttcaaaggttctatcttcaaaataatgctcagagcgggagaaatcgt |
118 |
Q |
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| T |
38984930 |
agtatctcttgggagtaataactccacgatttcaccacttggtcctccttgatttcaaaggttctatcttcaaaataatgctcagagcgggagaaatcgt |
38984831 |
T |
|
| Q |
119 |
gtgggtatcgtagctgcaagtttgggggctagagttgtggattaggaatgaaagtttttgaggtaaggnnnnnnnnnccatacatccatactaggtgtta |
218 |
Q |
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| T |
38984830 |
gtgggtatcgtagctgcaagtttgggggctagagttgtggattaggaatgaaagtttttgaggtaagg-gttttttcccatacatccatactaggtgtta |
38984732 |
T |
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| Q |
219 |
gggctgtgttattaaatagtgttagaaattctgttattatcg |
260 |
Q |
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| T |
38984731 |
gggctctgttattaaatagtgttagaaattctgttattatcg |
38984690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 40729770 - 40729636
Alignment:
| Q |
37 |
taactccacgatttcaccactcggttctccttgatttcaaaggttctatcttcaaaataatgctcagagcgggagaaatcgtgtgggtatcgtagctgca |
136 |
Q |
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| T |
40729770 |
taactccatgatttcaccacttggttctccttgatttcaaaggttcaatcttcgaaataatgctcagtacgggagagatcgtgtctgtatcgtaactgcg |
40729671 |
T |
|
| Q |
137 |
agtttgggggctagagttgtggattaggaatgaaag |
172 |
Q |
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| T |
40729670 |
agttt-gaggctaaagttgtggattaggaatgaaag |
40729636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 29270654 - 29270706
Alignment:
| Q |
198 |
atacatccatactaggtgttagggctgtgttattaaatagtgttagaaattct |
250 |
Q |
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|||| ||||||||| ||||||||| |||| |||||||||||| ||| |||||| |
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| T |
29270654 |
atacgtccatactaagtgttagggttgtgctattaaatagtggtagcaattct |
29270706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 11036845 - 11036736
Alignment:
| Q |
59 |
ggttctccttgatttcaaaggttctatcttcaaaataatgctcagagcgggagaaatcgtgtgggtatcgtagctgcaagtttgggggctagagttgtgg |
158 |
Q |
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||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||| ||||||||||||| ||||| | |||||||||||||| |
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| T |
11036845 |
ggttctccttgatttcaaaggctccatcttcaatataatgctcagagcgggagaaattgtgtctgtatcgtagctgcgagttt-gaggctagagttgtgg |
11036747 |
T |
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| Q |
159 |
attaggaatga |
169 |
Q |
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||||||||||| |
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| T |
11036746 |
attaggaatga |
11036736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 69267 - 69321
Alignment:
| Q |
196 |
ccatacatccatactaggtgttagggctgtgttattaaatagtgttagaaattct |
250 |
Q |
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|||||| ||||||||| |||||||| |||||||||||||||||| ||| |||||| |
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| T |
69267 |
ccatacgtccatactaagtgttaggactgtgttattaaatagtggtagcaattct |
69321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 24158893 - 24158947
Alignment:
| Q |
196 |
ccatacatccatactaggtgttagggctgtgttattaaatagtgttagaaattct |
250 |
Q |
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|||||||||||||||| ||| ||||||||| ||||||| ||||| ||| |||||| |
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| T |
24158893 |
ccatacatccatactacgtgctagggctgtcttattaattagtggtagcaattct |
24158947 |
T |
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