View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2377_low_8 (Length: 270)

Name: NF2377_low_8
Description: NF2377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2377_low_8
NF2377_low_8
[»] chr6 (15 HSPs)
chr6 (14-253)||(2952127-2952366)
chr6 (14-253)||(2927354-2927593)
chr6 (14-253)||(3003429-3003668)
chr6 (37-253)||(2937654-2937870)
chr6 (33-253)||(2964703-2964923)
chr6 (22-253)||(2974201-2974432)
chr6 (14-253)||(2934793-2935032)
chr6 (35-253)||(2997039-2997257)
chr6 (33-251)||(2983059-2983280)
chr6 (36-253)||(2658652-2658875)
chr6 (20-253)||(2929503-2929736)
chr6 (143-253)||(2978440-2978550)
chr6 (36-146)||(2979192-2979299)
chr6 (181-239)||(2954549-2954607)
chr6 (33-87)||(2985688-2985742)
[»] chr7 (1 HSPs)
chr7 (23-253)||(3339219-3339449)
[»] scaffold0024 (2 HSPs)
scaffold0024 (36-239)||(34909-35112)
scaffold0024 (36-239)||(44598-44801)
[»] chr3 (2 HSPs)
chr3 (33-253)||(49613630-49613850)
chr3 (14-253)||(49618618-49618845)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 2952366 - 2952127
Alignment:
Q  14 atattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcct 113  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  2952366 atattatctagtatatccctccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatatgactcct 2952267  T
Q  114 cagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||| |||||||    
T  2952266 cagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggttgaatcctgaacttttaattgaggaatttcaagaactccttccgaaaa 2952167  T
Q  214 cctcaagtcaagtaaacacttactttcagtgttcacttta 253  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2952166 cctcaagtcaagtaaacacttactttcagtgttcacttta 2952127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 2927593 - 2927354
Alignment:
Q  14 atattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcct 113  Q
    ||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||  |  |||||||| ||||||||  || |    
T  2927593 atattttccagtatttccctctgaacaagtatatccacatccttaccagtatttataaggtaatccaaaacagaacgataatcagtaatatatgaatcat 2927494  T
Q  114 cagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaa 213  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||   |||||||||||||||||||||||||||||||||    
T  2927493 cagggtaatgacactgctccaaagcaaccatattccgtaataaagtttcagtcgaatcctgaacttttaattgaggaatttcaagaactcctcccgaaaa 2927394  T
Q  214 cctcaagtcaagtaaacacttactttcagtgttcacttta 253  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2927393 cctcaagtcaagtaaacacttactttcagtgttcacttta 2927354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 3003429 - 3003668
Alignment:
Q  14 atattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcct 113  Q
    ||||| |||||||| || |||||||||||||||||||||||  || ||||||||||||||||||||||||||  |  |||||| | ||||||||  || |    
T  3003429 atattttccagtatttcgctctgaacaagtatatccacatccttagcagtatttataaggtaatccaaaacagaacgataatcggtaatatatgaatcat 3003528  T
Q  114 cagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  3003529 cagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatccgcaactaataattgaggaatttcaagaactcctcccgaaaa 3003628  T
Q  214 cctcaagtcaagtaaacacttactttcagtgttcacttta 253  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3003629 cctcaagtcaagtaaacacttactttcagtgttcacttta 3003668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 37 - 253
Target Start/End: Complemental strand, 2937870 - 2937654
Alignment:
Q  37 aacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaaa 136  Q
    |||||||||| || ||||  |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  2937870 aacaagtatacccgcatccttaccggtatttataaggtaatccaaaacaacaacataatcagcaatatatgactcatgagggtaatgacactgctccaaa 2937771  T
Q  137 gcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttac 236  Q
    ||||||||||||| ||| ||| ||||||||||||||| |||   ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  2937770 gcaaccatattccaaaacaaaatttcggtcgaatcctcaactgttaattgaggaatttcaagaactcctcctgaaaatctcaagtcaagtaaacaattac 2937671  T
Q  237 tttcagtgttcacttta 253  Q
    |||||||||||||||||    
T  2937670 tttcagtgttcacttta 2937654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 33 - 253
Target Start/End: Complemental strand, 2964923 - 2964703
Alignment:
Q  33 tctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctc 132  Q
    ||||||||||||||||||||||  | ||||||||||||||||||||||||||| ||||||| |||| |||||||| ||| | ||||||| ||||||||||    
T  2964923 tctgaacaagtatatccacatccttgccagtatttataaggtaatccaaaacagcaacatagtcagtaatatatgactcataagggtaacgacactgctc 2964824  T
Q  133 caaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 232  Q
    ||||||||||||||||||||| | | ||||||||  ||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2964823 caaagcaaccatattccgaaacataatttcggtcccatcgtgagctattaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 2964724  T
Q  233 ttactttcagtgttcacttta 253  Q
    |||||||||||||||||||||    
T  2964723 ttactttcagtgttcacttta 2964703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 2974432 - 2974201
Alignment:
Q  22 cagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaa 121  Q
    ||||||||  ||| ||||||||||||||||||| |||| ||||||||||||||||||||||| || |  |||||||  |||||||| ||  | |||||||    
T  2974432 cagtatattgctccgaacaagtatatccacatccgtactagtatttataaggtaatccaaaataaaatgataatcaataatatatgactgataagggtaa 2974333  T
Q  122 tgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagt 221  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||  ||| |||||   |||||||||||||||||||||||||||||||||||||||||    
T  2974332 tgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcttgaactgttaattgaggaatttcaagaactcctcccgaaaacctcaagt 2974233  T
Q  222 caagtaaacacttactttcagtgttcacttta 253  Q
    || ||||||| | ||||| |||||||||||||    
T  2974232 catgtaaacattcacttttagtgttcacttta 2974201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 2935032 - 2934793
Alignment:
Q  14 atattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcct 113  Q
    ||||||| |||||| ||  || |||||||||||||  |||| |||||||||||||||||||||||||  ||| ||||||||||||  |||||||  || |    
T  2935032 atattatgcagtatttcgttccgaacaagtatatcagcatccgtaccagtatttataaggtaatccatgacagcaacataatcagtgatatatgaatcat 2934933  T
Q  114 cagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaa 213  Q
    |||||||||||||||||||||||||||||||||| |||||  || |||| |||  ||| | |||   |||||||||||||||||||||||||||||||||    
T  2934932 cagggtaatgacactgctccaaagcaaccatatttcgaaacgaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaa 2934833  T
Q  214 cctcaagtcaagtaaacacttactttcagtgttcacttta 253  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  2934832 cctcaagtcaagtaaacacttacttttagtattcacttta 2934793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 35 - 253
Target Start/End: Original strand, 2997039 - 2997257
Alignment:
Q  35 tgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctcca 134  Q
    |||||||||||||| |||||  ||||||| |||||||||||||||||||||  ||||||||||| |||||||  ||  | || ||||||| |||||||||    
T  2997039 tgaacaagtatatcaacatccttaccagtgtttataaggtaatccaaaacagaaacataatcagtaatatataacttgttagtgtaatgaaactgctcca 2997138  T
Q  135 aagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacactt 234  Q
    |||||||||||||||||||||||| |||||||  ||||| ||||| |||   |||||||||||||||| |||||||||||||||||||||||||||||||    
T  2997139 aagcaaccatattccgaaataaagcttcggtccgatcctcaacaattaacgaaggaatttcaagaacttctcccgaaaacctcaagtcaagtaaacactt 2997238  T
Q  235 actttcagtgttcacttta 253  Q
     |||| |||||||||||||    
T  2997239 gcttttagtgttcacttta 2997257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 2983280 - 2983059
Alignment:
Q  33 tctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctc 132  Q
    |||||| ||||| |||||||||  ||||| |||||||||||||||||||||||| ||||||||||  |||||||| ||| | |||||||||||| |||||    
T  2983280 tctgaataagtacatccacatccttaccattatttataaggtaatccaaaacaagaacataatcaagaatatatgactcatgagggtaatgacaatgctc 2983181  T
Q  133 caaagcaaccatattccgaaataaagtttcggtcg---aatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaa 229  Q
    |||||||| |||||||||||| ||| |||||||||    ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||  ||||    
T  2983180 caaagcaatcatattccgaaacaaaatttcggtcgtccgatcatgaactattaattgaggaatttcaagaactcctcccgaaaacctcaagtcatataaa 2983081  T
Q  230 cacttactttcagtgttcactt 251  Q
    |||||||||| ||| |||||||    
T  2983080 cacttacttttagttttcactt 2983059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 36 - 253
Target Start/End: Original strand, 2658652 - 2658875
Alignment:
Q  36 gaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaa 135  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||| |||||||| ||| | |||||||||||| ||||||||    
T  2658652 gaacaagtatatccacatccttaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggtaatgacattgctccaa 2658751  T
Q  136 agcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcc------cgaaaacctcaagtcaagtaaa 229  Q
    |||||||||||| ||||| ||| |||| |||  ||| | |||   |||||||||||||||||||||||||||       |||||||||||||||||||||    
T  2658752 agcaaccatatttcgaaacaaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcctgattttgaaaacctcaagtcaagtaaa 2658851  T
Q  230 cacttactttcagtgttcacttta 253  Q
    |||||||||| |||| ||||||||    
T  2658852 cacttacttttagtgctcacttta 2658875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 2929736 - 2929503
Alignment:
Q  20 tccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggt 119  Q
    |||||||| ||  |||||| |||||||||  | ||  ||||||||||||||||  |||||| || |  ||||||||||  |||||||| ||| | |||||    
T  2929736 tccagtatttctttctgaataagtatatcggcgtccttaccagtatttataagaaaatccataatagtaacataatcaagaatatatgactcatgagggt 2929637  T
Q  120 aatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaa 219  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||||||  |||   |||   ||||||||||||||||||||||||||| |||||||| ||    
T  2929636 aatgaaactgctccaaagcaatcatattccaaaataaagtttcggtcccatctgcaactgttaattgaggaatttcaagaactcctcctgaaaaccttaa 2929537  T
Q  220 gtcaagtaaacacttactttcagtgttcacttta 253  Q
    |||||||||||||||||||| |||||||||||||    
T  2929536 gtcaagtaaacacttacttttagtgttcacttta 2929503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 253
Target Start/End: Complemental strand, 2978550 - 2978440
Alignment:
Q  143 atattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttactttcag 242  Q
    |||| |||||| ||| ||||||||  ||||| |||   ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||    
T  2978550 atataccgaaacaaaatttcggtcccatcctcaactcttaattgaggaatttcaagaactcctcccgaaaacctcaaatcaagtaaacactcacttttag 2978451  T
Q  243 tgttcacttta 253  Q
    |||||||||||    
T  2978450 tgttcacttta 2978440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 2979299 - 2979192
Alignment:
Q  36 gaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaa 135  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| || ||||||   ||||||| |||||||| ||| | |||||||| ||||||||||||    
T  2979299 gaacaagtatatccacatccgtaccggtatttataaggtaatcgaagacaaca---taatcagtaatatatgactcatgagggtaataacactgctccaa 2979203  T
Q  136 agcaaccatat 146  Q
    |||||||||||    
T  2979202 agcaaccatat 2979192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 2954607 - 2954549
Alignment:
Q  181 taattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttacttt 239  Q
    ||||||||||||| ||||||||| |   ||||||||||||||||||||||||| |||||    
T  2954607 taattgaggaattccaagaactcgttgtgaaaacctcaagtcaagtaaacactcacttt 2954549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 2985742 - 2985688
Alignment:
Q  33 tctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaac 87  Q
    ||||||||||||||||| ||||  ||| |||||||||||||||||||||| ||||    
T  2985742 tctgaacaagtatatccgcatccttactagtatttataaggtaatccaaagcaac 2985688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 3339449 - 3339219
Alignment:
Q  23 agtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaat 122  Q
    ||||| || |||| ||||||||||||||||||  ||| ||||||||||||| ||||||||| | |||||||||||  |||||||| ||| ||||||||||    
T  3339449 agtatttcgctcttaacaagtatatccacatccatactagtatttataaggaaatccaaaaaagcaacataatcaataatatatgactcatcagggtaat 3339350  T
Q  123 gacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtc 222  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||  ||| | |||   |||||||||||||||||||||||||||||||||||||||| |    
T  3339349 gacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcgtcaactgttaattgaggaatttcaagaactcctcccgaaaacctcaagcc 3339250  T
Q  223 aagtaaacacttactttcagtgttcacttta 253  Q
    ||||||||||| ||||| |||||||||||||    
T  3339249 aagtaaacactcacttttagtgttcacttta 3339219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 36 - 239
Target Start/End: Original strand, 34909 - 35112
Alignment:
Q  36 gaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaa 135  Q
    |||||||||||||| ||||  ||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||    
T  34909 gaacaagtatatccgcatccttaccagtatttataaggaaatccaaaacaacaacataatcagtaatatatgactcataagggtaatgacactgctccaa 35008  T
Q  136 agcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacactta 235  Q
    |||||||||||||||||| ||| ||||||||  ||||| |||   |||| ||||||||||||| |||||| ||||||||| ||||||||||||||||| |    
T  35009 agcaaccatattccgaaacaaaatttcggtcccatcctcaacttctaatcgaggaatttcaagcactccttccgaaaaccccaagtcaagtaaacactca 35108  T
Q  236 cttt 239  Q
    ||||    
T  35109 cttt 35112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 239
Target Start/End: Original strand, 44598 - 44801
Alignment:
Q  36 gaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaa 135  Q
    ||||| |||||||  ||||  ||||||||||||||||||||||||||| | ||||||||| |  ||||||||  || | |||||||||| ||| |||||     
T  44598 gaacatgtatatctgcatccttaccagtatttataaggtaatccaaaatagcaacataattaataatatatgattcattagggtaatgatactactccat 44697  T
Q  136 agcaaccatattccgaaataaagtttc-ggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacactt 234  Q
    |||||||||||| | ||| ||| |||| ||| | ||| | | |   ||||||||||||||||||||||| | | ||||||||||| |||||||||||||     
T  44698 agcaaccatatttcaaaacaaaatttcaggttg-atcatcagctcttaattgaggaatttcaagaactctttctgaaaacctcaaatcaagtaaacactc 44796  T
Q  235 acttt 239  Q
    |||||    
T  44797 acttt 44801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 253
Target Start/End: Complemental strand, 49613850 - 49613630
Alignment:
Q  33 tctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctc 132  Q
    ||||||||||||||||||||||  | |||||||| |||||| ||||||||||| |||||||||| | ||| || | |||   |||||| ||||| |||||    
T  49613850 tctgaacaagtatatccacatccttgccagtattaataaggaaatccaaaacagcaacataatccgtaatgtaggactcactagggtagtgacattgctc 49613751  T
Q  133 caaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacac 232  Q
    ||||||||||||||||||||| ||| |||| ||| |||||| |||    |||||||||||||||||||| | ||| ||||||||||| ||||||||||||    
T  49613750 caaagcaaccatattccgaaacaaaatttcagtccaatcctcaactttcaattgaggaatttcaagaacccgtcctgaaaacctcaaatcaagtaaacac 49613651  T
Q  233 ttactttcagtgttcacttta 253  Q
    | ||||| |||||||||||||    
T  49613650 tcacttttagtgttcacttta 49613630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 49618845 - 49618618
Alignment:
Q  14 atattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcct 113  Q
    ||||||||| ||||  | |||||||||||||||||| ||||  ||||  |||||||||||||||||||||||  || |||||||  |||||| |  || |    
T  49618845 atattatcctgtattcctctctgaacaagtatatccgcatccctaccgatatttataaggtaatccaaaacagaaatataatcataaatataggaatcat 49618746  T
Q  114 cagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaa 213  Q
     ||||||||||           |||||||||||||| |||||||||| |||||   |||| |||   ||||||||||||||||||||||| ||| |||||    
T  49618745 gagggtaatga-----------agcaaccatattcc-aaataaagttacggtccggtcctcaactcttaattgaggaatttcaagaactcgtccggaaaa 49618658  T
Q  214 cctcaagtcaagtaaacacttactttcagtgttcacttta 253  Q
    ||||||||||||||||||  || ||| |||||||||||||    
T  49618657 cctcaagtcaagtaaacatgtagttttagtgttcacttta 49618618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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