View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2378_high_1 (Length: 361)
Name: NF2378_high_1
Description: NF2378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2378_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 42935565 - 42935901
Alignment:
| Q |
13 |
tcatcactttcagccacatgaatctcctctccaccaattagattcattagaaacttaacttgtcccaactcttgttccaagctctctttcaacacattca |
112 |
Q |
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| T |
42935565 |
tcatcactttcagccacatgaatctcctctccaccaattagattcattagaaacttaacttgtcccaactcttgttccaagctctctttcaacacattca |
42935664 |
T |
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| Q |
113 |
acgttgccaacgtagcttcgcggttcttaacaacaccaccaacattttcatgatcaac---atcagtagtattggtctttggctccatcacagttcctga |
209 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
42935665 |
acgttgccaacgtagcttcacggttcttaacaacaccaccgacattttcatgatcaaccacatcagaagtattggtctttggctccatcacagttcctga |
42935764 |
T |
|
| Q |
210 |
tgctgtaacaacatcatcctcttggatcactttttcttcttcgaaccgaacttgtttcacaacttcatcatctttgctttgatcctttgggaatacaggc |
309 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42935765 |
tgctgtaacaacagcatcctcttggatcactttttcttcttcgaaccgaacttgtttcacaacttcatcatctttgctttgatcctttgggaatacaggc |
42935864 |
T |
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| Q |
310 |
acaagttccaatccatcttcattgaaattccagccac |
346 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
42935865 |
acaagttccaatccatcttcattgaaattccagccac |
42935901 |
T |
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