View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2378_low_1 (Length: 483)

Name: NF2378_low_1
Description: NF2378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2378_low_1
NF2378_low_1
[»] chr6 (3 HSPs)
chr6 (59-476)||(658125-658542)
chr6 (268-354)||(660709-660795)
chr6 (268-318)||(911153-911203)
[»] chr2 (1 HSPs)
chr2 (163-247)||(36660945-36661031)
[»] chr8 (2 HSPs)
chr8 (102-138)||(30657711-30657747)
chr8 (99-138)||(43717868-43717907)
[»] chr1 (1 HSPs)
chr1 (99-138)||(7244588-7244627)
[»] chr7 (2 HSPs)
chr7 (102-138)||(18765384-18765420)
chr7 (110-138)||(34464155-34464183)
[»] chr5 (2 HSPs)
chr5 (102-138)||(35445778-35445814)
chr5 (102-138)||(40426865-40426901)
[»] chr4 (1 HSPs)
chr4 (102-138)||(8705041-8705077)
[»] chr3 (1 HSPs)
chr3 (102-138)||(25447179-25447215)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 59 - 476
Target Start/End: Complemental strand, 658542 - 658125
Alignment:
Q  59 gttaaattgtttttgtttaagctatgctgaagaacttaggaatagtctcacaaaatttatgtcaatagataaactcaaattaaattgagcaaagaatgtt 158  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  658542 gttaaattatttttgtttaagctatgctggagaacttaggaatagtctcacaaaacttatgtcaatagataaactcaaattaaatcgagcaaagaatgtt 658443  T
Q  159 tgctcttgatccatctttggaaccaaatgaagaaacatgaaaatgtatctattatagcagaacttgctggacattgcattgttagggaacaatgatgagt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  658442 tgctcttgatccatctttggaaccaaatgaagaaacatgaaaatgtatctattgtagcagaacttgctggacattgcattgttagggaacaatgatgagt 658343  T
Q  259 ttagcatcaccctccctataaagaactatccgagactactttgtagcatcttcttgaatcttttaggcatattaaactaactaaatgttgttgacaaaag 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  658342 ttagcatcaccctccctataaagaactatccgagactactttgtagcatcttcttgaatcttttaggcatattaaactaactaaatgctgttgacaaaag 658243  T
Q  359 cagttgtagatattgattttgtgatattagtggtatgactgactacgaattttcttcaaactaatgttatttggcaaggttcctctttcctgaggtttta 458  Q
    |||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  658242 cagttgtagatattgattttgtgatattagtggtataagtgactacaaattttcctcaaactaatgttatttggcaaggttcctctttcctgaggtttta 658143  T
Q  459 aatgctcacttcatctct 476  Q
    ||||||||||||||||||    
T  658142 aatgctcacttcatctct 658125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 660795 - 660709
Alignment:
Q  268 ccctccctataaagaactatccgagactactttgtagcatcttcttgaatcttttaggcatattaaactaactaaatgttgttgaca 354  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||||||| |||||| | |||| || ||| |||| |||||||||    
T  660795 ccctccctaaagagaactatccgggactactttgtagcatcttcttgaatcctttaggaagattataccaaccaaattttgttgaca 660709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 911153 - 911203
Alignment:
Q  268 ccctccctataaagaactatccgagactactttgtagcatcttcttgaatc 318  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||    
T  911153 ccctccctaaagagaactatccgggactactttgtagcatcttcttgaatc 911203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 36661031 - 36660945
Alignment:
Q  163 cttgatccatctttggaaccaaatgaagaaaca--tgaaaatgtatctattatagcagaacttgctggacattgcattgttagggaa 247  Q
    ||||||||| ||||||||||||| || ||||||  ||||| | || ||||| ||||||||||||||||||| |||| || |||||||    
T  36661031 cttgatccagctttggaaccaaacgacgaaacacatgaaagtataactattgtagcagaacttgctggacactgcactgctagggaa 36660945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 30657747 - 30657711
Alignment:
Q  102 agtctcacaaaatttatgtcaatagataaactcaaat 138  Q
    ||||||||||||||||||||| |||||||||||||||    
T  30657747 agtctcacaaaatttatgtcattagataaactcaaat 30657711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 43717907 - 43717868
Alignment:
Q  99 aatagtctcacaaaatttatgtcaatagataaactcaaat 138  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  43717907 aatagtctcacaaaacttatgtcaatagataagctcaaat 43717868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 7244627 - 7244588
Alignment:
Q  99 aatagtctcacaaaatttatgtcaatagataaactcaaat 138  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  7244627 aatagtctcacaaaacttatatcaatagataaactcaaat 7244588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 18765384 - 18765420
Alignment:
Q  102 agtctcacaaaatttatgtcaatagataaactcaaat 138  Q
    |||||||||||| |||||||||||||||| |||||||    
T  18765384 agtctcacaaaacttatgtcaatagataagctcaaat 18765420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 138
Target Start/End: Complemental strand, 34464183 - 34464155
Alignment:
Q  110 aaaatttatgtcaatagataaactcaaat 138  Q
    |||||||||||||||||||||||||||||    
T  34464183 aaaatttatgtcaatagataaactcaaat 34464155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 35445814 - 35445778
Alignment:
Q  102 agtctcacaaaatttatgtcaatagataaactcaaat 138  Q
    |||||||||||| |||||||| |||||||||||||||    
T  35445814 agtctcacaaaacttatgtcagtagataaactcaaat 35445778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 40426865 - 40426901
Alignment:
Q  102 agtctcacaaaatttatgtcaatagataaactcaaat 138  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  40426865 agtctcacaaaatttatgtcattagataagctcaaat 40426901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 8705041 - 8705077
Alignment:
Q  102 agtctcacaaaatttatgtcaatagataaactcaaat 138  Q
    |||||||||||| |||||||||||||||| |||||||    
T  8705041 agtctcacaaaacttatgtcaatagataagctcaaat 8705077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 25447215 - 25447179
Alignment:
Q  102 agtctcacaaaatttatgtcaatagataaactcaaat 138  Q
    |||||||||||| |||||||| |||||||||||||||    
T  25447215 agtctcacaaaacttatgtcagtagataaactcaaat 25447179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University