View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2378_low_3 (Length: 337)
Name: NF2378_low_3
Description: NF2378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2378_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 33802988 - 33802658
Alignment:
| Q |
1 |
gtcaggctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33802988 |
gtcaggctaattcatcattcaagagaagtagatcgcctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcag |
33802889 |
T |
|
| Q |
101 |
aagacgcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33802888 |
aagacgcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggat |
33802789 |
T |
|
| Q |
201 |
gaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcctggtggtcctgcatcatttctatatccctctgcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33802788 |
gaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcctggtggtcctgcatcatttctatatccctctgcag |
33802689 |
T |
|
| Q |
301 |
caacaagagaaacaacaagttcttcatctca |
331 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||| |
|
|
| T |
33802688 |
caacaagagaagcaacatgttcttcttctca |
33802658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 33731609 - 33731279
Alignment:
| Q |
1 |
gtcaggctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33731609 |
gtcaggctaattcatcattcaagagaagtagatcgcctgatccattcactagaggggaaacttctaatcaaggttcacaaattgatgaaaggtttagcag |
33731510 |
T |
|
| Q |
101 |
aagacgcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggat |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33731509 |
aagacacactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggat |
33731410 |
T |
|
| Q |
201 |
gaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcctggtggtcctgcatcatttctatatccctctgcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33731409 |
gaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcctggtggtcctgcatcatttctatatccctctgcag |
33731310 |
T |
|
| Q |
301 |
caacaagagaaacaacaagttcttcatctca |
331 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |
|
|
| T |
33731309 |
caacaagagaagcaacaagttcttcttctca |
33731279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 6145531 - 6145784
Alignment:
| Q |
6 |
gctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagac |
105 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | |||||||||| |
|
|
| T |
6145531 |
gctaattcattgttcaagaggaggagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaagttgacgaaagctcaagcagaagac |
6145630 |
T |
|
| Q |
106 |
gcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaaga |
205 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||||||||| ||||||||||| | || | ||||||||||||||||||| | ||| ||||||| |
|
|
| T |
6145631 |
acacttttcctcctccttttcatcttcatcaagacaatgtc---aacatgtcttcatcac---aagaaacattttgggatcatttcctgatgaatgaaga |
6145724 |
T |
|
| Q |
206 |
tgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcc |
265 |
Q |
| |
|
|| |||| || | ||||||| ||||||| |||| | || ||| |||||||||||| |||| |
|
|
| T |
6145725 |
tgatgatataaatgcaggaccaagtagtgctacaaatcggtccgaaattaatagccctcc |
6145784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 6126112 - 6126368
Alignment:
| Q |
6 |
gctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagac |
105 |
Q |
| |
|
|||||||||| || ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| ||| | | |||||||| |
|
|
| T |
6126112 |
gctaattcattgttaaagagaaatagatcacccgatccattcattagaggtgaaacttctaatcaaggttcacaagttgacagaagctcaatcagaagac |
6126211 |
T |
|
| Q |
106 |
gcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaaga |
205 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||| | ||||||||||||| | ||| | ||| ||||||| |
|
|
| T |
6126212 |
gcactcttcctcctccttttcatattcatcaagacaatgtc---aacacgtcttctttaccgcaagaaacattttgggataagttcttgatgtatgaaga |
6126308 |
T |
|
| Q |
206 |
tgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcc |
265 |
Q |
| |
|
|| |||| |||| ||||||| ||||||| ||||||||| || |||||||||||| |||| |
|
|
| T |
6126309 |
tgctgatatagatgcaggaccaagtagtgctactactcagttcgaaattaatagccctcc |
6126368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 6151966 - 6152030
Alignment:
| Q |
21 |
aagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattga |
85 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
6151966 |
aagagaagtagatcacatgatccattaactagaggtgaaacttctaatcaaggtttacaagttga |
6152030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 6138494 - 6138621
Alignment:
| Q |
21 |
aagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagacgcactcttcctcctc |
120 |
Q |
| |
|
|||||||| |||||||| || |||| | |||||||||||||||| |||||||||||| ||||||| | | ||| |||||||||||||||||| || |
|
|
| T |
6138494 |
aagagaagcagatcaccaaatgcattaaatagaggtgaaacttctgctcaaggttcacagggtgatgaaggttctagtagaagacgcactcttccttctt |
6138593 |
T |
|
| Q |
121 |
cttttcatccttatcaagacaatgtcaa |
148 |
Q |
| |
|
||||||| || |||||||||| ||||| |
|
|
| T |
6138594 |
tttttcatactcatcaagacaacgtcaa |
6138621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 34283397 - 34283454
Alignment:
| Q |
274 |
ctgcatcatttctatatccctctgcagcaacaagagaaacaacaagttcttcatctca |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | || |||||||||| ||||| |
|
|
| T |
34283397 |
ctgcatcatttctatatccctctgcagcaataagaggagcagcaagttcttcttctca |
34283454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 10343426 - 10343368
Alignment:
| Q |
199 |
atgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaat |
257 |
Q |
| |
|
|||||| ||||||||||| ||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
10343426 |
atgaagttgttgatgtaggcgcaggaccaaatagtactactactctgtctcaaattaat |
10343368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University