View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2378_low_6 (Length: 289)
Name: NF2378_low_6
Description: NF2378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2378_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 47425812 - 47426080
Alignment:
| Q |
11 |
cacagaaataaggatgtactatattcgaaacttcataagtgggaaggaatagattgttcaatgcctatcaatctagggctataaatt--gta-agtagtg |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |
|
|
| T |
47425812 |
cacacaaataaggatgtactatattcgaaacttcataagtgggaaggaatagattgttcaatgcctatcaatctagggctataaataaggaatagtagta |
47425911 |
T |
|
| Q |
108 |
taaagccaaaactagaaaaacatatattaaagccttttctcactaggtatttaaattttttaattctccagatttggacgattatgttagccggaagttg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47425912 |
taaagccaaaactagaaaaacatatattaaagccttttctcactaggtatttaaattttttaattctccagatttggacgattatgttagctggaagttg |
47426011 |
T |
|
| Q |
208 |
ctataaattcattgtgccga--atgatgtcatactaatcaaatgtaaaaaggatatcatatgtaatttg |
274 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47426012 |
ctataaattcattgtgccgaatatgatgtcatactaatcaaatgtaaaaaggatatcatacgtaatttg |
47426080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 50432185 - 50432262
Alignment:
| Q |
166 |
tttaattctccagatttggacgattatgttagccggaagttgctataaattcattgtgccgaatgatgtcatactaat |
243 |
Q |
| |
|
||||||| |||| |||| || ||||| || || |||| |||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
50432185 |
tttaattttccatatttaaactattatattggctggaaattgctataaattcattgtgctgaacgatgtcatactaat |
50432262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University