View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2379_high_12 (Length: 247)
Name: NF2379_high_12
Description: NF2379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2379_high_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 23904396 - 23904161
Alignment:
| Q |
12 |
tcatcaaacacttcctgggtcgcttattattctgtaaatggtgttggattgttttgttgctgctgatgttgctctttgtgctgttttcaagtttgtgtta |
111 |
Q |
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| T |
23904396 |
tcatgaaacacttcctgggtcgcttattattctgtaaatggtgttggattgttttgttgctgctgatgttgctctttgtgctgttttcaagtttgtgtta |
23904297 |
T |
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| Q |
112 |
gttcagttcacaggagcttgatttggttttgatttaaggtacatttaattttaagcttttgaattcgtaatcattaatagtgaatttaagaatgctgtta |
211 |
Q |
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| T |
23904296 |
gttcagttcacaggagcttgatttggttttgatttaaggtacatttaattttaagcttttgaattcgtaatcattaatagtgaatttaagaatgctgtta |
23904197 |
T |
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| Q |
212 |
gaaatattggttttattctggaattgtctaattaga |
247 |
Q |
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| T |
23904196 |
gaaatattgggtttattctggaattgtctaattaga |
23904161 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 3492224 - 3492314
Alignment:
| Q |
57 |
ggattgttttgttgctgctgatgttgctctttgtgctg-ttttcaagtttgtgttagttcagttcacaggagcttgatttggttttgatttaaggt |
151 |
Q |
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|||||||||||||||||| | ||||||||||||||||| | ||||||||||| ||| ||||| | ||||||| ||||||||||||| ||||| |
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| T |
3492224 |
ggattgttttgttgctgccggtgttgctctttgtgctgctcttcaagtttgtattaattcag-----aagagcttggtttggttttgattcaaggt |
3492314 |
T |
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