View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2379_low_1 (Length: 487)
Name: NF2379_low_1
Description: NF2379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2379_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 22 - 471
Target Start/End: Original strand, 15927149 - 15927609
Alignment:
| Q |
22 |
ttgtattatgttattgcgcttcagcatata--agatgctcaagtaccacttgagcttggtctctattctactagggcagcctccggctgaaactaatttt |
119 |
Q |
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| T |
15927149 |
ttgtattatgttattgcgcttcagcatatataagatgctcaagtaccacttgagcttggtctctattctactagggcagcctccggctgaaactaatttt |
15927248 |
T |
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| Q |
120 |
tcatgaaatcaaaacgctagacatcatttgtcaaccataccaagctgattcatggcaaaatcaagctccattgagtgaggttccaccacctcctc----- |
214 |
Q |
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| T |
15927249 |
tcatgaaatcaaaacgctagacatcatttgccaaccataccaagctgattcatggcaaaatcaagctccattcagtgaggttccaccacctcctccccgt |
15927348 |
T |
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| Q |
215 |
----atatgctagaagtcaatgacagcagcaaaactcactttgaaaatgtgcagtttaagccaagttgagctaaactgtgcaacttccaacaccaaaagg |
310 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15927349 |
cggaatatgctagaaggcaatgacaacagcaaaactcactttgaaaatgtgcagtttaagccaagttgagctaaactgtgcaacttccaacaccaaaagg |
15927448 |
T |
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| Q |
311 |
ttagggatattctgtctctagccaccatcactctaactagcgtttacacatttctaggctcatttagtcccaatagacgagtgtgtaaagggaatgagca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15927449 |
ttagggatattctgtctctagccaccatcactctaactagcgtttacacatttctaggctcatttagtcccaatagacgagtgtgtaaagggaatgagca |
15927548 |
T |
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| Q |
411 |
agaggtatatgatcagtgtaaggagaaaaggagggttatggaatatgcatgatctaaacct |
471 |
Q |
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| T |
15927549 |
agaggtatatgatcagtgtaaggagaaaaggagggttatggaatatgcatgatctaaacct |
15927609 |
T |
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