View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2379_low_10 (Length: 279)

Name: NF2379_low_10
Description: NF2379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2379_low_10
NF2379_low_10
[»] chr7 (1 HSPs)
chr7 (22-258)||(8550316-8550552)
[»] chr4 (2 HSPs)
chr4 (171-258)||(48995885-48995972)
chr4 (95-131)||(48995933-48995969)
[»] chr8 (2 HSPs)
chr8 (172-256)||(10226929-10227013)
chr8 (95-131)||(10226975-10227011)
[»] chr5 (1 HSPs)
chr5 (174-258)||(39268913-39268997)
[»] chr1 (2 HSPs)
chr1 (172-245)||(3324377-3324450)
chr1 (95-131)||(3324412-3324448)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 8550316 - 8550552
Alignment:
Q  22 atatatgtatatagatatcgattcacagatgaaattattcttcacaaatttatttacatatgccacttagggatacttttgatttcattgaccaatttaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8550316 atatatgtatatagatatcgattcacagatgaaattattcttcacaaatttatttacatatgccacttagggatacttttgatttcattgaccaattgaa 8550415  T
Q  122 ttattcttcagtcttcagaaactgaaccgactcaataattaaagatgtgtggtacttttgatttcattgactaattgaattattcttcacaaatttattg 221  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8550416 ttattcttcagtcttcacaaactgaaccgactcaataattaaagatgagtggtacttttgatttcattgactaattgaattattcttcacaaatttattg 8550515  T
Q  222 aaataattacctaaaatagcttatgaatatgatgtta 258  Q
     |||| |||||||||||||||||||||||||||||||    
T  8550516 gaatacttacctaaaatagcttatgaatatgatgtta 8550552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 48995972 - 48995885
Alignment:
Q  171 tggtacttttgatttcattgactaattgaattattcttcacaaatttattgaaataattacctaaaatagcttatgaatatgatgtta 258  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||||||||||||||||||||||||||||    
T  48995972 tggtacttttgatttcattgactaattgaattattcttcacatatttactggaatacttacctaaaatagcttatgaatatgatgtta 48995885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 48995969 - 48995933
Alignment:
Q  95 tacttttgatttcattgaccaatttaattattcttca 131  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  48995969 tacttttgatttcattgactaattgaattattcttca 48995933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 10227013 - 10226929
Alignment:
Q  172 ggtacttttgatttcattgactaattgaattattcttcacaaatttattgaaataattacctaaaatagcttatgaatatgatgt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||||||||||||||||||||||    
T  10227013 ggtacttttgatttcattgactaattgaattattcttcacaaatttactcgaatacttacctaaaatagcttatgaatatgatgt 10226929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 10227011 - 10226975
Alignment:
Q  95 tacttttgatttcattgaccaatttaattattcttca 131  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  10227011 tacttttgatttcattgactaattgaattattcttca 10226975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 39268997 - 39268913
Alignment:
Q  174 tacttttgatttcattgactaattgaattattcttcacaaatttattgaaataattacctaaaatagcttatgaatatgatgtta 258  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||    
T  39268997 tacttttgatttcatagactaattcaattattcttcacaaatttattggaatacttacctaaaatagcttttgaatatgatgtta 39268913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 3324450 - 3324377
Alignment:
Q  172 ggtacttttgatttcattgactaattgaattattcttcacaaatttattgaaataattacctaaaatagcttat 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  |||| ||||||||||||||||||    
T  3324450 ggtacttttgatttcattgactaattgaattattcttcacaaatttactcgaatacttacctaaaatagcttat 3324377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 3324448 - 3324412
Alignment:
Q  95 tacttttgatttcattgaccaatttaattattcttca 131  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  3324448 tacttttgatttcattgactaattgaattattcttca 3324412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University