View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2379_low_11 (Length: 271)
Name: NF2379_low_11
Description: NF2379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2379_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 256
Target Start/End: Complemental strand, 1160364 - 1160107
Alignment:
| Q |
5 |
ggaaagtcaaaatgcacacaaacatgaactatctgttactataagaaagggaggaggagga------catggaggttcaggtggccatggaagtggaatg |
98 |
Q |
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| T |
1160364 |
ggaaagtcaaaatgcacacaaacatgaactatctgttactataagaaagggaggaggaggaggaggacatggaggttcaggtggccatggaagtggaatg |
1160265 |
T |
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| Q |
99 |
ggaggaagaggaattggtagaggaaggtcaggtggagcagctgcaggaattatcggcggtgcagtggctggtggagttgctggtggagtggttggtggtg |
198 |
Q |
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| T |
1160264 |
ggaggaagaggaattggtagaggaaggtcaggtggagcagctgcaggaattatcggcggtgcagtggctggtggagttgctggtggagtggttggtggtg |
1160165 |
T |
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| Q |
199 |
cagtcgccaatcacgggcacaattatgaacacaaacaccttcatgtttgtgtcccaac |
256 |
Q |
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| T |
1160164 |
cagtcgccaatcacgggcacaattatggacacaaacaccttcatgtttgtgtcccaac |
1160107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 1141912 - 1141865
Alignment:
| Q |
15 |
aatgcacacaaacatgaactatctgttactataagaaagggaggagga |
62 |
Q |
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| T |
1141912 |
aatgaacacaaacatgaactatctgttaccataagaaaaggaggagga |
1141865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 1137312 - 1137266
Alignment:
| Q |
15 |
aatgcacacaaacatgaactatctgttactataagaaagggaggagg |
61 |
Q |
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| T |
1137312 |
aatgaacacaaacatgaactatctgttaccataagaaaaggaggagg |
1137266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 1172360 - 1172323
Alignment:
| Q |
21 |
cacaaacatgaactatctgttactataagaaagggagg |
58 |
Q |
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| T |
1172360 |
cacaaacatgaactatctcttactataagaaagggagg |
1172323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 1133733 - 1133696
Alignment:
| Q |
21 |
cacaaacatgaactatctgttactataagaaagggagg |
58 |
Q |
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| T |
1133733 |
cacaaacatgaactatctgttactgtaagaaaaggagg |
1133696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 1165002 - 1164962
Alignment:
| Q |
21 |
cacaaacatgaactatctgttactataagaaagggaggagg |
61 |
Q |
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| T |
1165002 |
cacaaacatgaactatcccatactataagaaagggaggagg |
1164962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 15612601 - 15612657
Alignment:
| Q |
1 |
ttgaggaaagtcaaaatgcacacaaacatgaactatctgttactataagaaagggag |
57 |
Q |
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| T |
15612601 |
ttgaggaaagttaaaatgaacgcaatcatgatctatctgctactataagaaagggag |
15612657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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