View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2379_low_12 (Length: 268)
Name: NF2379_low_12
Description: NF2379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2379_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 23904060 - 23903938
Alignment:
| Q |
1 |
ctatacagtgtttctaaaataaaaatagttcgaagagagatccgagatgactgtatcatatagaatctggatgagaatcatccgagaaatcgtagtcctc |
100 |
Q |
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| T |
23904060 |
ctatacagtgtttctaaaa-aacaatagtacgaagagagatccaagatgactgtatcatatagaatctggatgagaatcatccgagaaatcgtagtcgtc |
23903962 |
T |
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| Q |
101 |
ggctccaagaatccctatatgagt |
124 |
Q |
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| T |
23903961 |
agctccaagaatccctatatgagt |
23903938 |
T |
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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 23903872 - 23903814
Alignment:
| Q |
190 |
tgagtggagagagaaattgaccatactctcaatctcagtgtctgaagattgagctgctg |
248 |
Q |
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| T |
23903872 |
tgagtggagagagaaattgagcatactctcaatctcagtgtctgaagattgagctgctg |
23903814 |
T |
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