View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2379_low_14 (Length: 250)
Name: NF2379_low_14
Description: NF2379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2379_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39211284 - 39211524
Alignment:
| Q |
1 |
agtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgttacaattaagaacatgtgtcaattgccctgcagctgttacatccaattt |
100 |
Q |
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| T |
39211284 |
agtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgttacaattaagaacatgtgtcaattgccctgcagctgttacatccaattt |
39211383 |
T |
|
| Q |
101 |
aagtagnnnnnnntgaaacaaatttatgatatcagctatatagtttttccactgcaacatctgttgtcaagattcaattagacatagtgaaattgactta |
200 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39211384 |
aagtagaaaaaaatgaaacaaatttatgctatcagctatatagtttttccactgcaacatctgttgtcaagattcaattagacatagtgaaattgactta |
39211483 |
T |
|
| Q |
201 |
agtgcattatactttcttatgactatgctttatagtattat |
241 |
Q |
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||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
39211484 |
agtacattatactttcttatgactatgctttattgtattat |
39211524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 27509656 - 27509416
Alignment:
| Q |
1 |
agtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgttacaattaagaacatgtgtcaattgccctgcagctgttacatccaattt |
100 |
Q |
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| T |
27509656 |
agtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgttacaattaagaacatgtgtcaattgccctgcagctgttacatccaattt |
27509557 |
T |
|
| Q |
101 |
aagtagnnnnnnntgaaacaaatttatgatatcagctatatagtttttccactgcaacatctgttgtcaagattcaattagacatagtgaaattgactta |
200 |
Q |
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| T |
27509556 |
aagtagaaaaaaatgaaacaaatttatactatcagttatatagtttttcccctgcaacatctgttgtcaagattcaattagacatagtgaaattgactct |
27509457 |
T |
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| Q |
201 |
agtgcattatactttcttatgactatgctttatagtattat |
241 |
Q |
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| T |
27509456 |
agtacattatactttcttatgactatgctttattgtattat |
27509416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 27271761 - 27271994
Alignment:
| Q |
11 |
ttatgtacttcataagctatcaattttca--tcctgcatctgttacaattaagaacatg-tgtcaat--tgccctgcagctgttacatccaatttaagta |
105 |
Q |
| |
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||||||| ||| ||||||||||||||||| || |||||||||||||||||||| ||| || ||| | | ||||||||||||||||||||||| ||| |
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| T |
27271761 |
ttatgtatttcttaagctatcaattttcagttcttgcatctgttacaattaagatgatgatgacaaacattcactgcagctgttacatccaatttaggta |
27271860 |
T |
|
| Q |
106 |
gnnnnnnntgaaacaaatttatgatatcagctatatagtttttccactgcaacatctgttgtcaagattcaattagacatagtgaaattgacttaagtgc |
205 |
Q |
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| T |
27271861 |
gaaaaaa-tgaaacatatttatactatcagctatatagtttttccactgcaacatctgttgtgaagattcaattagacacagtgaaatagacttaaatac |
27271959 |
T |
|
| Q |
206 |
attatactttcttatgactatgctttatagtatta |
240 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
27271960 |
attatactttcttatgactatgctttattgtatta |
27271994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 29707096 - 29706863
Alignment:
| Q |
11 |
ttatgtacttcataagctatcaattttca--tcctgcatctgttacaattaagaacatg-tgtcaat--tgccctgcagctgttacatccaatttaagta |
105 |
Q |
| |
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||||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||| || || | | |||||| ||||||||| |||||| ||| |
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| T |
29707096 |
ttatgtacttcttaagctatcaattttcagttcttgcatctgttacaattaagaagatgatgaaaaacattcactgcagttgttacatctaatttaggta |
29706997 |
T |
|
| Q |
106 |
gnnnnnnntgaaacaaatttatgatatcagctatatagtttttccactgcaacatctgttgtcaagattcaattagacatagtgaaattgacttaagtgc |
205 |
Q |
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| | ||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| | | |
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| T |
29706996 |
gaaaaaatt-aaacatatttatactatcagctatatagtttttccactgcaacatctgttgtgaagattcaattagacacagtgaaatagacttaaatac |
29706898 |
T |
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| Q |
206 |
attatactttcttatgactatgctttatagtatta |
240 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
29706897 |
attatactttcttatgactatgctttattgtatta |
29706863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 42093195 - 42092950
Alignment:
| Q |
1 |
agtgcttcagttatgtacttcataagctatcaattttca--tcctgcatctgttacaattaagaacatgtgt--caattgccctgcagctgttacatcca |
96 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||| | || ||||| ||||||||||| | ||||| || ||||||||||| ||||||||||||| |
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| T |
42093195 |
agtgcttcaattatgtacttcaaatgctatcaattttgagttcatgcatatgttacaattaggcacatgagtatcaattgccctgtggctgttacatcca |
42093096 |
T |
|
| Q |
97 |
atttaagtagnnnnnnn-tgaaacaaatttatgatatcagctatatagtttttccactgcaacatctgttgtcaagattcaattagacatagtgaaattg |
195 |
Q |
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|||| ||||| |||||||||||||| ||||||| |||||||||||||||||| || ||||||||||||||||||| |||||||||||| | |
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| T |
42093095 |
atttcagtaggaaaaaaatgaaacaaatttataccatcagctttatagtttttccactgcagcacatgttgtcaagattcaattaaacatagtgaaatag |
42092996 |
T |
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| Q |
196 |
acttaagtgcattatactttcttatgactatgctttatagtattat |
241 |
Q |
| |
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|||||| | ||||||| ||||||||||||| ||||| ||||||| |
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| T |
42092995 |
acttaaatatattataccttcttatgactatactttactgtattat |
42092950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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