View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2379_low_16 (Length: 237)
Name: NF2379_low_16
Description: NF2379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2379_low_16 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 39211064 - 39211290
Alignment:
| Q |
14 |
attatttgccttgtgtactttctgctaccaagttgggtattgaggaaatattatcattatcttcggtatgagtatagtctttgatatgctatctatttgt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39211064 |
attatttgccttgtgtactttctgctaccaagttgggtattgaggaaatattatcattatctttggtatgagtatagtctttgatatgctatctatttgt |
39211163 |
T |
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| Q |
114 |
tacttcatatgctatcaa-ttttgagttcctgcatctgagatcaattctcataattatgagatttgga--atattattctcccttatgaactttttcaat |
210 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39211164 |
tacttcatatgctatcaatttttgagttcctgcatctgagatcaattcttataattatgagatttggaatatattattctcccttatgaactttttcaat |
39211263 |
T |
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| Q |
211 |
tctttgcatataagaaaaacagtgctt |
237 |
Q |
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| T |
39211264 |
tctttgcatataagaaaaacagtgctt |
39211290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 27509872 - 27509650
Alignment:
| Q |
14 |
attatttgccttgtgtactttctgctaccaagttgggtattgaggaaatattatcattatcttcggtatgagtatagtctttgatatgctatctatttgt |
113 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| |||||||||| |||||||||||||| ||||||||| |
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| T |
27509872 |
attatttgccttgtgtactttctgctacgaagttgggtattaaggaaatactatcattatctttggtatgagta--gtctttgatatgctttctatttgt |
27509775 |
T |
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| Q |
114 |
tacttcatatgctatcaattttgagttcctgcatctgagatcaattctcataattatgagatttggaatattattc-tcccttatgaactttttcaattc |
212 |
Q |
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|||||||||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27509774 |
tacttcatatgctatcaattttgagttcatgcatatgagttaaattctcataattatgagatttggaatattattcttcccttatgaactttttcaattc |
27509675 |
T |
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| Q |
213 |
tttgcatataagaaaaacagtgctt |
237 |
Q |
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| T |
27509674 |
tttgcatataagaaaaatagtgctt |
27509650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 27271532 - 27271747
Alignment:
| Q |
14 |
attatttgccttgtgtactttctgctaccaagttgggtattgaggaaatattatcattatcttcggtatgagtatagtctttgatatgctatctattt-g |
112 |
Q |
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|||| ||||||| ||||||||||||| ||||||| || ||| |||||| |||||||||||||| ||||| ||||||||||| |||||| |||| |||| | |
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| T |
27271532 |
attagttgccttatgtactttctgctgccaagttcggcattaaggaaaaattatcattatctttggtataagtatagtcttcgatatgttatccattttg |
27271631 |
T |
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| Q |
113 |
ttacttcatatgctatcaattttgagttcctgcatctgagatcaattctcataattatgagatttggaatattattc-tcccttatgaactttttcaatt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||| ||||||||||||||||| |||| |
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| T |
27271632 |
ttacttcatatgctatcaattttgagttcctgcatctgaattcaattctcataattatgacatttgaaatatcattcttcccttatgaactttttaaatt |
27271731 |
T |
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| Q |
212 |
ctttgcatataagaaa |
227 |
Q |
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| T |
27271732 |
ctttgcatacaagaaa |
27271747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 29707324 - 29707110
Alignment:
| Q |
14 |
attatttgccttgtgtactttctgctaccaagttgggtattgaggaaatattatcattatcttcggtatgagtatagtctttgatatgctatctatttgt |
113 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||| ||||| ||||||||||| |||||| ||||||||||| |
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| T |
29707324 |
attagttgccttatgtactttctgctaccaagttgggtattaaggaaaaattatcattatctttggtataagtatagtcttcgatatgttatctatttgt |
29707225 |
T |
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| Q |
114 |
tacttcatatgctatcaattttgagttcctgcatctgagatcaattctcataattatgagatttggaatattattc-tcccttatgaactttttcaattc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| ||||| |
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| T |
29707224 |
tacttcatatgctatcaattttgagttcctgcatctgaattcaattctcataattatgagatttgaaatatcattcttcccttatgaactttttaaattc |
29707125 |
T |
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| Q |
213 |
tttgcatataagaaa |
227 |
Q |
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|||||||| |||||| |
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| T |
29707124 |
tttgcatacaagaaa |
29707110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 42093416 - 42093189
Alignment:
| Q |
14 |
attatttgccttgtgtacttt-ctgctaccaagttgg----gtattgaggaaatattatcattatcttcggtatgagtatagtctttgatatgctatcta |
108 |
Q |
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|||| ||||||| |||||||| ||||||||||||||| ||||| |||||| |||||||||||||| |||| |||| ||||||||||||||||||| |
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| T |
42093416 |
attagttgccttatgtacttttctgctaccaagttggttgggtattaaggaaaaattatcattatctttggtagaagta--gtctttgatatgctatcta |
42093319 |
T |
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| Q |
109 |
tttgttacttcatatgctatcaattttgagttcctgcatctgagatcaattctcataattatgagatttggaatatta-ttctcccttatgaactttttc |
207 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | || ||||||||||||||| || |
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| T |
42093318 |
tttgttacttcttatgctatcaattttgagttcctgcatctgagttcatttctcataattatgagatttggaatatcatttgtcccttatgaactttctc |
42093219 |
T |
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| Q |
208 |
aattctttgcatataagaaaaacagtgctt |
237 |
Q |
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| T |
42093218 |
aattctttgcatataagaaaaatagtgctt |
42093189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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