View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2379_low_17 (Length: 236)
Name: NF2379_low_17
Description: NF2379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2379_low_17 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 45693815 - 45693617
Alignment:
| Q |
23 |
gtatgagaggaaacaattgtgatcaagaagaagcagcgacttatattccttcaaacaccacctctgctgacctatattcctttcgatatcattgtagaaa |
122 |
Q |
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| T |
45693815 |
gtatgagaggaaacaaccgtgatcaagaagaagcagcgacttatattccttcaaacaccacctctgctgacctatattcctttcgatatcattgtcgaaa |
45693716 |
T |
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| Q |
123 |
tattgtgtagactcccggtcaag-ttcttccacaactccgctgcatatgcaagttgtggaattctctaatctcaaatgatcccaaatttgctaagaatc |
220 |
Q |
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| T |
45693715 |
tattgtgtagactcccggtcaagtttcttctacaactccgctgcatatgcaagtcgtggaattctctaatctcaattgatcccaaatttgctaagaatc |
45693617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 25869493 - 25869444
Alignment:
| Q |
154 |
caactccgctgcatatgcaagttgtggaattctctaatctcaaatgatcc |
203 |
Q |
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| T |
25869493 |
caactccgctgcatttgcaagtcatggaattctctaatctcaaatgatcc |
25869444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 23896973 - 23896904
Alignment:
| Q |
126 |
tgtgtagactcccggtcaagttcttcc-acaactccgctgcatatgcaagttgtggaattctctaatctc |
194 |
Q |
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| T |
23896973 |
tgtgcagactccctgtcaagttcctcctacaattccgctgcgtctgcaagtcatggaattctctaatctc |
23896904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 25477861 - 25477910
Alignment:
| Q |
169 |
tgcaagttgtggaattctctaatctcaaatgatcccaaatttgctaagaa |
218 |
Q |
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| T |
25477861 |
tgcaagtcatggaattctctaatctcaaatgatcctgattttgctaagaa |
25477910 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 1422009 - 1421917
Alignment:
| Q |
118 |
agaaatattgtgtagactcccggtcaagttcttcc-acaactccgctgcatatgcaagttgtggaattctctaatctcaaatgatcccaaatt |
209 |
Q |
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| T |
1422009 |
agaaatcttgtgtagactcccagtgaaattcctcctacaattccgttgcgtctgtaagtcgtggaattttctaatctcaaatgatcccaaatt |
1421917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 41166 - 41125
Alignment:
| Q |
169 |
tgcaagttgtggaattctctaatctcaaatgatcccaaattt |
210 |
Q |
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| T |
41166 |
tgcaagtcatggaattctctaatctcaaatgatcctaaattt |
41125 |
T |
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