View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2379_low_18 (Length: 228)
Name: NF2379_low_18
Description: NF2379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2379_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 4 - 212
Target Start/End: Original strand, 1116352 - 1116560
Alignment:
| Q |
4 |
ttttgttggagaagtggtgttggagaatgagcgatgtgaatagagttaatggtttaaattttaatcaagtaaatatggagtgaaatggggtttttcacaa |
103 |
Q |
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| T |
1116352 |
ttttgttggagaagtggtgttggtgaatgagcgatgtgaatagagttaatggtttaaattttaatcaagtaaatatggagtgaaatggggtttttcacaa |
1116451 |
T |
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| Q |
104 |
ggtgtaatctagattcatcttggtgggaaaactaacgttgagtaaagatggtggtggtaatgttcctggtatttggttttctaatcgcttgtcaaaagtg |
203 |
Q |
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| T |
1116452 |
ggtgtaatctagattcatcttggtgggaaaactaacgttgagtaaagatggtggtggtaatgttcctggtatttggttttctaatcgcttgtcaaaagtg |
1116551 |
T |
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| Q |
204 |
gttggaaat |
212 |
Q |
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| T |
1116552 |
gttggaaat |
1116560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 1094916 - 1095123
Alignment:
| Q |
1 |
tgcttttgttggagaagtggtgttggagaatgagcgatgtgaatagagttaatggtttaaattttaatcaagtaaatatggagtgaaatggggtttttca |
100 |
Q |
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| T |
1094916 |
tgcttttgttggagaagtgatgtaggagaatgaggggtgtgaatggagtttatggtttaaatttttaacaagtaaatatggggtg-gatggggtttttta |
1095014 |
T |
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| Q |
101 |
caaggtgtaatctagattcatcttggtgggaaaactaacgttgagtaaagatggtggtggtaatgttcctggtatttggttttctaatcgcttgtcaaaa |
200 |
Q |
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| T |
1095015 |
tagggtgtaatctagattcatcttggtggaaaaactaatgttgagtacagatagtggtgg---tgttcctggtagttggttttctaaccgcatgccaaaa |
1095111 |
T |
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| Q |
201 |
gtggttggaaat |
212 |
Q |
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| T |
1095112 |
gtagttggaaat |
1095123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 1097937 - 1098111
Alignment:
| Q |
9 |
ttggagaagtggtgttggagaatgagcgatgtgaatagagttaatggtttaaattttaatcaagtaaatatggagtgaa--atggggtttttcacaaggt |
106 |
Q |
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| T |
1097937 |
ttggagaagtggtgttggaggat-----atatgaatagagtttacggtttaaatacttatgaagtaaatatggggtggataatggggttttttgcttggt |
1098031 |
T |
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| Q |
107 |
gtaatctagattcatcttggtgggaaaa-ctaacgttgagtaaagatggtggtggtaatgttcctggtatttggttttct |
185 |
Q |
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| T |
1098032 |
gtaatctagatttatcttggtgggaaaaactaatgttgagtaaagatggtggtggtaatgtttttggtatttggctttct |
1098111 |
T |
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